install scilifelab_parsers #94
Workflow file for this run
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| name: lint-code | |
| on: [push] | |
| jobs: | |
| # Use ruff to check for code style violations | |
| ruff-check: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install ruff | |
| - name: ruff --> Check for style violations | |
| # Configured in pyproject.toml | |
| run: ruff check . | |
| # Use ruff to check code formatting | |
| ruff-format: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install ruff | |
| - name: ruff --> Check code formatting | |
| run: ruff format --check . | |
| # Use mypy for static type checking | |
| mypy-check: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install mypy | |
| # Start by installing type stubs | |
| - name: mypy --> Install stubs | |
| run: echo -e "y" | mypy --install-types **/*.py || exit 0 | |
| - name: mypy --> Static type checking | |
| # Configured in pyprojet.toml | |
| run: mypy **/*.py | |
| # Use pipreqs to check for missing dependencies | |
| pipreqs-check: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Install pipreqs | |
| run: pip install pipreqs | |
| # Install packages that are not found on PyPI | |
| - name: Install postgreSQL | |
| run: sudo apt-get install postgresql | |
| - name: Install flowcell_parser | |
| run: pip install git+https://github.com/SciLifeLab/flowcell_parser.git | |
| - name: Install scilifelab_parsers | |
| run: pip install git+https://github.com/SciLifeLab/scilifelab_parsers.git | |
| - name: Run pipreqs | |
| run: pipreqs --savepath pipreqs.txt | |
| - name: Compare requirements | |
| run: | | |
| echo "=== pipreqs.txt contents: ===" | |
| cat pipreqs.txt | |
| echo "=== requirements.txt contents: ===" | |
| cat requirements.txt | |
| echo "=== diff contents: ===" | |
| diff=$(diff requirements.txt pipreqs.txt) | |
| echo $diff | |
| exit 1 |