Bump frozendict from 2.3.4 to 2.4.6

Bump parsec from 3.13 to 3.17

Bump networkx from 2.8.4 to 3.4.2

Bump python-arango from 7.4.1 to 8.1.6

Bump tomli from 2.0.1 to 2.2.1

Bump biopython from 1.79 to 1.85

Bump devtools from 0.9.0 to 0.12.2

Bump pytest from 7.1.2 to 8.3.5

Bump flake8 from 4.0.1 to 7.1.2

Bump pytest-cov from 3.0.0 to 6.0.0

Bump coverage from 6.4.2 to 7.7.1

Bump requests from 2.28.1 to 2.32.3

Merge pull request #70 from kbase/dev-add_codecov

remove build yaml files

add missing coverage file

add gha workflows

Merge pull request #66 from kbase/dev-gtdb-archaea

Merge pull request #66 from kbase/dev-gtdb-archaea