Interactive image viewer for 3D medical images that can be used with inline functions (image_viewing.py) or through a command line interface (viewImage.py).
The viewer is a PyQt5 application with a matplotlib canvas to draw the images.
Pyplot-based image viewer for 3D medical images that was developed for a Bachelor's project in Medical Image Processing at the Institute of Medical Informatics (University of Lübeck).
Open an image viewer with image_viewing.show_image. You can scroll through slices across the three principal axes of the 3D image with the mouse.
Open an image with corresponding mask image (different integer values are colored differently): image_viewing.show_image_with_mask
Set markers or seed points interactively and return them on closing the window (image_viewing.show_and_return_markers). This is useful for interactive region growing pipelines.
- Python3
- matplotlib
- SimpleITK
- PyQt5