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development #119

Merged
merged 10 commits into from
Jul 17, 2024
Merged

development #119

merged 10 commits into from
Jul 17, 2024

Commits on Jul 10, 2024

  1. fix(EsmDTA): added missing args and refactored attributes #113 

    For retraining on new splits #113
    @jyaacoub
    jyaacoub committed Jul 10, 2024
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Commits on Jul 11, 2024

  1. feat(tcga): heat map #111

    @jyaacoub
    jyaacoub committed Jul 11, 2024
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  2. fix(tcga_analysis): +plot_combined_heatmap #111

    @jyaacoub
    jyaacoub committed Jul 11, 2024
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  3. fix(tcga): heatmap for entire MAF file #111 

    Using "Hugo_Symbol" instead of "gene"
    @jyaacoub
    jyaacoub committed Jul 11, 2024
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Commits on Jul 15, 2024

  1. feat(splits): one csv for all tests + oncokb overlap #113

    @jyaacoub
    jyaacoub committed Jul 15, 2024
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  2. fix(checkpoint): variable min_delta depending on dataset 

    Davis and kiba are able to achieve lower losses but pdbbind operates at a higher scale so they need different thresholds for min_delta in order for the early stopping to work correctly.
    @jyaacoub
    jyaacoub committed Jul 15, 2024
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  3. feat(tcga): updated heatmap with normalized vals #111

    @jyaacoub
    jyaacoub committed Jul 15, 2024
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Commits on Jul 17, 2024

  1. refactor(tcga_analysis): comments

    @jyaacoub
    jyaacoub committed Jul 17, 2024
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  2. results: davis_esm and kiba_DG[0-3] #113

    @jyaacoub
    jyaacoub committed Jul 17, 2024
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  3. feat: + kiba_{DG,aflow,esm} to tuned model configs

    @jyaacoub
    jyaacoub committed Jul 17, 2024
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