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juanu/README.md

Hi there! πŸ‘‹ I'm Juan Ugalde!

🧬 About Me

I'm an Assistant Professor at the Center for Bioinformatics and Integrative Biology (CBIB) at Universidad Andres Bello (http://cbib.cl) where I lead the Microbial Data Science Lab. My research focuses on applying computational approaches to understand microbial communities and their interactions.

  • πŸ”¬ Research Focus: Microbial ecology, bioinformatics, and computational biology
  • πŸŽ“ Position: Assistant Professor at Universidad Andres Bello
  • πŸ§ͺ Lab: Microbial Data Science Lab
  • πŸ“« How to reach me: [email protected]

πŸ’» Technical Expertise

Programming Languages & Tools

🐍 Python

  • Data Analysis: pandas, numpy, scipy
  • Machine Learning: scikit-learn, TensorFlow, PyTorch
  • Bioinformatics: Biopython, scikit-bio
  • Visualization: matplotlib, seaborn, plotly

πŸ“Š R

  • Statistical Analysis: Base R, tidyverse
  • Bioinformatics: Bioconductor, phyloseq, DESeq2
  • Visualization: ggplot2, plotly
  • Reproducible Research: R Markdown, bookdown

πŸ”„ Nextflow

  • Workflow Development: Pipeline design and optimization
  • Reproducible Science: Containerized workflows
  • High-Performance Computing: Cluster and cloud execution
  • Data Processing: Large-scale genomic data analysis

πŸ”¬ Research Interests

  • Microbial Ecology: Understanding microbial community dynamics
  • Metagenomics: Analyzing complex microbial communities
  • Machine Learning in Biology: Applying AI to biological problems
  • Reproducible Research: Developing robust computational workflows
  • Open Science: Promoting transparent and accessible research

πŸ“ˆ GitHub Stats

GitHub Stats
Top Languages

πŸ† Featured Projects

πŸŽ“ Teaching & Mentoring

πŸ“š Recent Publications

🀝 Let's Connect!

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