Merge pull request #2 from origyZ/fix-workflow

fix: requirements and workflow

.coveragec

@@ -7,3 +7,5 @@ relative_files = True
 exclude_lines =
 	^VERSION =
 	raise NotImplementedError
+
+ignore_errors = True

.github/workflows/test.yml

@@ -24,7 +24,7 @@ jobs:
           cache: 'pip'
       - run: pip install -U flake8
       - name: Run python code lint
-        run: flake8 moltx
+        run: flake8 dilipredict
 
   tests:
     name: "Python ${{ matrix.py-version }} unit-tests"
@@ -43,18 +43,18 @@ jobs:
       - run: pip install -r test-requirements.txt -U
       - name: Run unit-tests
         run: pytest tests
-      - name: Coveralls Parallel
-        uses: AndreMiras/coveralls-python-action@develop
-        with:
-          flag-name: "Integration Test - ${{ matrix.py-version }}"
+      # - name: Coveralls Parallel
+      #   uses: AndreMiras/coveralls-python-action@develop
+      #   with:
+      #     flag-name: "Integration Test - ${{ matrix.py-version }}"
           # parallel: true
 
-  report_coverage:
-    name: Report testing coverage
-    needs: tests
-    runs-on: ubuntu-latest
-    steps:
-      - name: Coveralls Finished
-        uses: AndreMiras/coveralls-python-action@develop
-        with:
-          parallel-finished: true
+  # report_coverage:
+  #   name: Report testing coverage
+  #   needs: tests
+  #   runs-on: ubuntu-latest
+  #   steps:
+  #     - name: Coveralls Finished
+  #       uses: AndreMiras/coveralls-python-action@develop
+  #       with:
+  #         parallel-finished: true

requirements.txt

@@ -1,3 +1,6 @@
-einops
+numpy==1.24.4
 torch==1.13.1
 torchvision==0.14.1
+einops
+pillow
+scikit-learn

tests/test_piplines.py

@@ -1,7 +1,7 @@
 from dilipredict import models, pipelines
 
 
-def test_MutSmiReg(image_loader):
+def test_DILIPredict(image_loader):
     test_img_path = 'tests/data/test_img.tiff'
     image_files = [
         [test_img_path] * 10,