MASFENON

Standalone project for the framework behind c2c-sepia, containing only the most recent version of the MASFENON framework.

DEPENDENCIES

• armadillo
• MPI implementation (tested on OpenMPI)
• boost (if you have some problems during compilation, consider installing program options from boost as well)

FILE STRUCTURE

.
├── CMakeLists.txt # cmake file
├── examples.md # examples of how to use the program
├── .github # contains the github actions
├── build # contains the object files
├── src # contains the source files
├── data # contains the test data files
└── scripts # contains some scripts in bash and python to be used in the project to visualize the reulting data

BUILD

cmake -B build
cd build
make

PARAMETER CUSTOMIZATION

The custom functions used for the scaling of the perturbation values (dissipation and conservation) are defined in <src/CustomFunctions> in the source folder

USAGE

HELP MESSAGE

./build/masfenon --help

EXAMPLE

./build/masfenon --fUniqueGraph [graph].tsv --fInitialPerturbationPerType [matrix].tsv --typeInteractionFolder [typesInteractionFolder]

LICENSE

Under development, if any problems arise open an issue in the repository

Shield:

This work is licensed under a Creative Commons Attribution 4.0 International License.