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Jordi Burguet-Castell edited this page Jan 9, 2018
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Entrez is a simple Python interface to query the biological databases kept at the NCBI. It uses the Entrez Programming Utilities (E-utilities), nine server-side programs that access the Entrez query and database system at the National Center for Biotechnology Information (NCBI).
The interface is in the file entrez.py
. It contains:
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equery(tool[, ...])
- Yield the response of a query with the given tool. -
eselect(tool, db[, ...])
- Return a dict that references the elements selected with tool over database db. -
eapply(tool, db, elems[, retmax, ...])
- Yield the response of applying a tool on db for the selected elements. -
on_search(db, term, tool[, db2, ...])
- Yield the response of applying a tool over the results of a search query.