This R package implements the CAUSE method described in Morrison et al 2018 (pre-print coming soon).
Get started with an example analysis: https://jean997.github.io/cause/ldl_cad.html
To install:
devtools::install_github("jean997/cause")
You will need both mixsqp and ashr. Please use mixsqp-0.1-97 which is currently the version available through CRAN.
To install development versions you can use
devtools::install_github("stephenslab/mixsqp")
devtools::install_github("stephens999/ashr")
However, right now it is most advisable to use the versions available through CRAN.