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Fixed issue with `SampleSpecificPerturbationNetwork` not being able to handle `X.index` with a `.name` that was not `NoneType`. Created a hack to allow `pd.MultiIndex` support (converts to strings and warns). Made `include_reference_for_samplespecific=True` the new default which creates a clone of the reference and uses that as the background network. Added `is_square` to `Symmetric` object.
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# ============== | ||
# Ensemble NetworkX | ||
# ============== | ||
# Ensemble network methods in Python | ||
# ------------------------------------ | ||
# GitHub: https://github.com/jolespin/ensemble_networkx | ||
# PyPI: https://pypi.org/project/ensemble_networkx | ||
# ------------------------------------ | ||
# ======= | ||
# Contact | ||
# ======= | ||
# Producer: Josh L. Espinoza | ||
# Contact: [email protected], [email protected] | ||
# Google Scholar: https://scholar.google.com/citations?user=r9y1tTQAAAAJ&hl | ||
# ======= | ||
# License BSD-3 | ||
# ======= | ||
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@@ -33,7 +33,7 @@ | |
# ======= | ||
# Version | ||
# ======= | ||
__version__= "2022.2.9" | ||
__version__= "2023.7.18" | ||
__author__ = "Josh L. Espinoza" | ||
__email__ = "[email protected], [email protected]" | ||
__url__ = "https://github.com/jolespin/ensemble_networkx" | ||
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@@ -48,7 +48,6 @@ | |
"umap_fuzzy_simplical_set_graph", | ||
] + [ | ||
"signed", | ||
"get_weights_from_graph", | ||
"get_symmetric_category", | ||
"dense_to_condensed", | ||
"condensed_to_dense", | ||
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