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Add nap6 menu contributions #51

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merged 3 commits into from
Jun 26, 2024
Merged

Add nap6 menu contributions #51

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4eff43a
Add menu contributions
jni Jun 26, 2024
af3486f
Update skimage seed -> rng
jni Jun 26, 2024
bd47b72
Update Python metadata
jni Jun 26, 2024
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12 changes: 6 additions & 6 deletions setup.cfg
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Original file line number Diff line number Diff line change
Expand Up @@ -14,9 +14,10 @@ classifiers =
Topic :: Software Development :: Testing
Programming Language :: Python
Programming Language :: Python :: 3
Programming Language :: Python :: 3.7
Programming Language :: Python :: 3.8
Programming Language :: Python :: 3.9
Programming Language :: Python :: 3.10
Programming Language :: Python :: 3.11
Programming Language :: Python :: 3.12
Operating System :: OS Independent
License :: OSI Approved :: BSD License

Expand All @@ -27,15 +28,14 @@ package_dir =
setup_requires = setuptools_scm
install_requires =
magicgui
napari>=0.4.11.dev80
napari-plugin-engine>=0.1.4
napari>=0.4.19
numpy
pyyaml
qtpy
scipy
scikit-image
scikit-image>=0.21
toolz
zarr
zarr>=2.11,<3

python_requires = >=3.7

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2 changes: 1 addition & 1 deletion src/zarpaint/_tests/test_watershed.py
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Expand Up @@ -69,7 +69,7 @@ def test_watershed_split_3d_with_blobs(make_napari_viewer):
blob_size_fraction=0.1,
n_dim=3,
volume_fraction=0.1,
seed=0
rng=0,
)
labeled_blobs = ndi.label(blobs)[0]
viewer = make_napari_viewer()
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15 changes: 14 additions & 1 deletion src/zarpaint/napari.yaml
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@@ -1,5 +1,5 @@
name: zarpaint
schema_version: 0.1.0
schema_version: 0.2.0
contributions:
commands:
- id: zarpaint.add_points_3d_with_alt_click
Expand Down Expand Up @@ -42,3 +42,16 @@ contributions:
display_name: Split With Watershed
- command: zarpaint.copy_data
display_name: Copy Data

menus:
napari/file/new_layer:
- command: zarpaint.create_labels
napari/layers/visualize:
- command: zarpaint.DimsSorter
- command: zarpaint.set_axis_labels
napari/layers/annotate:
- command: zarpaint.add_points_3d_with_alt_click
napari/layers/data:
- command: zarpaint.copy_data
napari/layers/segment:
- command: zarpaint.watershed_split
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