Consider layer transform metadata when applying transform

[jni]

Fixes #80

• Add failing test for issue apply_affine does not correctly transform images for scales<1 #80
• Consider layer transform metadata when applying transform

[codecov-commenter]

Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (e9bd67c) 90.12% compared to head (bb06c28) 90.66%.

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Additional details and impacted files

@@            Coverage Diff             @@
##             main      #85      +/-   ##
==========================================
+ Coverage   90.12%   90.66%   +0.53%     
==========================================
  Files           7        7              
  Lines         243      257      +14     
==========================================
+ Hits          219      233      +14     
  Misses         24       24              

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