update tutorials

.gitignore

@@ -135,3 +135,4 @@ src/db
 
 finished_forms
 .idea/
+output

doc/tutorials/tutorial1.ipynb

@@ -4,7 +4,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "# Didge Lab Tutorial - Part 1\n",
+    "# Didge Lab Tutorial - Part 1 - Introduction and acoustical simulation\n",
     "\n",
     "This tutorial explains\n",
     "\n",
@@ -23,7 +23,7 @@
    "outputs": [],
    "source": [
     "import sys\n",
-    "sys.path.append('../../')"
+    "sys.path.append('../../src/')"
    ]
   },
   {
@@ -86,7 +86,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 4,
+   "execution_count": 11,
    "metadata": {},
    "outputs": [
     {
@@ -95,20 +95,18 @@
        "<AxesSubplot: xlabel='x', ylabel='y'>"
       ]
      },
-     "execution_count": 4,
+     "execution_count": 11,
      "metadata": {},
      "output_type": "execute_result"
     },
     {
      "data": {
-      "image/png": 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\n",
+      "image/png": "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\n",
       "text/plain": [
-       "<Figure size 432x288 with 1 Axes>"
+       "<Figure size 1080x216 with 1 Axes>"
       ]
      },
-     "metadata": {
-      "needs_background": "light"
-     },
+     "metadata": {},
      "output_type": "display_data"
     }
    ],