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41 changes: 19 additions & 22 deletions blog/basic-python.html
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Expand Up @@ -909,7 +909,7 @@ <h3>Exponential and logarithmic functions<a class="headerlink" href="#exponentia
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Expand Down Expand Up @@ -1287,7 +1287,7 @@ <h2>Lambda Lambda Lambda<a class="headerlink" href="#lambda-lambda-lambda" title
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<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>&lt;function &lt;lambda&gt; at 0x7f46392db790&gt;
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4
</pre></div>
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Expand All @@ -1303,7 +1303,7 @@ <h2>Lambda Lambda Lambda<a class="headerlink" href="#lambda-lambda-lambda" title
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<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>&lt;function &lt;lambda&gt; at 0x7f4658f051f0&gt;
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>&lt;function &lt;lambda&gt; at 0x7f7dcd022790&gt;
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Expand All @@ -1320,7 +1320,7 @@ <h2>Lambda Lambda Lambda<a class="headerlink" href="#lambda-lambda-lambda" title
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<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>&lt;function &lt;lambda&gt; at 0x7f46396a95e0&gt;
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5
5
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Expand All @@ -1341,7 +1341,7 @@ <h2>Lambda Lambda Lambda<a class="headerlink" href="#lambda-lambda-lambda" title
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<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>&lt;function &lt;lambda&gt; at 0x7f46392db940&gt;
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>&lt;function &lt;lambda&gt; at 0x7f7dcd022790&gt;
1
3
6
Expand Down Expand Up @@ -2056,17 +2056,17 @@ <h3>3D arrays<a class="headerlink" href="#id2" title="Permalink to this headline
</div>
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[[0.03591956 0.75125393 0.75633291]
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[[0.8353288 0.89398955 0.07328626]
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[[0.78955714 0.38903201 0.08592092]
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[0.52178892 0.29528652 0.27736734]]]
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Expand All @@ -2080,11 +2080,11 @@ <h3>3D arrays<a class="headerlink" href="#id2" title="Permalink to this headline
</div>
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[[0.07863008 0.96784538 0.75396588]
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[0.07863008 0.03591956 0.8353288 ]
[0.75633291 0.06033794 0.77588445]
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[[0.18669699 0.06565541 0.12783519]
[0.48427686 0.97268936 0.9302502 ]
[0.78955714 0.92595708 0.52178892]]
[0.18669699 0.48427686 0.78955714]
[0.1844265 0.44207862 0.18952069]
</pre></div>
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Expand Down Expand Up @@ -2319,9 +2319,6 @@ <h2>Advanced string formatting<a class="headerlink" href="#advanced-string-forma
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>the value of a in the dictionary is 56. It works woohoo!
</pre></div>
</div>
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>
</pre></div>
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<p>And, you can access elements of a list. Note, however you cannot use -1 as an index in this case.</p>
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Expand Up @@ -742,7 +742,7 @@ <h2>Linear least squares fitting with linear algebra<a class="headerlink" href="
</div>
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0.0006245733788397446 -0.3145221843003413
0.000624573378839699 -0.3145221843003413
</pre></div>
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<img alt="../_images/data-analysis_10_1.png" src="../_images/data-analysis_10_1.png" />
Expand Down Expand Up @@ -772,11 +772,11 @@ <h2>Linear regression with confidence intervals (updated)<a class="headerlink" h
</div>
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[[ 4.90747574e-02 5.09057619e-02]
[-3.49867288e-04 -2.45825348e-04]
[ 5.40268291e-07 2.14670133e-06]
[-7.67338615e-09 7.03689639e-10]
[-3.23368790e-12 1.06276264e-11]]
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[[ 4.90747573e-02 5.09057619e-02]
[-3.49867290e-04 -2.45825350e-04]
[ 5.40268319e-07 2.14670135e-06]
[-7.67338629e-09 7.03689494e-10]
[-3.23368759e-12 1.06276267e-11]]
</pre></div>
</div>
</div>
Expand Down Expand Up @@ -840,7 +840,7 @@ <h2>Linear regression with confidence intervals.<a class="headerlink" href="#lin
1.34e-06 [ 1.0715e-06 1.6155e-06]
-3.48e-09 [-4.9032e-09 -2.0665e-09]
3.70e-12 [ 1.3501e-12 6.0439e-12]
R^2 = 0.9999869672459532
R^2 = 0.9999869672459537
</pre></div>
</div>
<img alt="../_images/data-analysis_17_1.png" src="../_images/data-analysis_17_1.png" />
Expand Down Expand Up @@ -892,7 +892,7 @@ <h2>Nonlinear curve fitting<a class="headerlink" href="#nonlinear-curve-fitting"
</div>
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Fitted parameters = [-56.46839642 0.57233248 2.74078161 16.55905697]
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Fitted parameters = [-56.46839641 0.57233217 2.7407944 16.55905648]
</pre></div>
</div>
<img alt="../_images/data-analysis_21_1.png" src="../_images/data-analysis_21_1.png" />
Expand Down Expand Up @@ -1135,8 +1135,8 @@ <h2>Nonlinear curve fitting with confidence intervals<a class="headerlink" href=
</div>
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>c0: 4.967139663117906 [4.626744762113276 5.307534564122536]
c1: 2.1099511282728582 [1.7671162232894149 2.452786033256302]
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>c0: 4.967139665561225 [4.626744770869817 5.307534560252633]
c1: 2.1099511246584144 [1.7671162238282245 2.4527860254886042]
</pre></div>
</div>
<img alt="../_images/data-analysis_40_1.png" src="../_images/data-analysis_40_1.png" />
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24 changes: 12 additions & 12 deletions blog/differential-equations.html
Original file line number Diff line number Diff line change
Expand Up @@ -1256,8 +1256,8 @@ <h3>Solving an ode for a specific solution value<a class="headerlink" href="#sol
</div>
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>2.4574668234994657
2.4574668234994657
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>2.4574668234994665
2.4574668234994665
</pre></div>
</div>
</div>
Expand Down Expand Up @@ -2420,10 +2420,10 @@ <h3>Modeling a transient plug flow reactor<a class="headerlink" href="#modeling-
</div>
<div class="output traceback highlight-ipythontb notranslate"><div class="highlight"><pre><span></span><span class="gt">---------------------------------------------------------------------------</span>
<span class="ne">KeyError</span><span class="g g-Whitespace"> </span>Traceback (most recent call last)
<span class="nn">File /opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages/PIL/Image.py:2390,</span> in <span class="ni">Image.save</span><span class="nt">(self, fp, format, **params)</span>
<span class="g g-Whitespace"> </span><span class="mi">2389</span> <span class="k">try</span><span class="p">:</span>
<span class="ne">-&gt; </span><span class="mi">2390</span> <span class="nb">format</span> <span class="o">=</span> <span class="n">EXTENSION</span><span class="p">[</span><span class="n">ext</span><span class="p">]</span>
<span class="g g-Whitespace"> </span><span class="mi">2391</span> <span class="k">except</span> <span class="ne">KeyError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
<span class="nn">File /opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages/PIL/Image.py:2416,</span> in <span class="ni">Image.save</span><span class="nt">(self, fp, format, **params)</span>
<span class="g g-Whitespace"> </span><span class="mi">2415</span> <span class="k">try</span><span class="p">:</span>
<span class="ne">-&gt; </span><span class="mi">2416</span> <span class="nb">format</span> <span class="o">=</span> <span class="n">EXTENSION</span><span class="p">[</span><span class="n">ext</span><span class="p">]</span>
<span class="g g-Whitespace"> </span><span class="mi">2417</span> <span class="k">except</span> <span class="ne">KeyError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>

<span class="ne">KeyError</span>: &#39;.mp4&#39;

Expand Down Expand Up @@ -2458,12 +2458,12 @@ <h3>Modeling a transient plug flow reactor<a class="headerlink" href="#modeling-
<span class="g g-Whitespace"> </span><span class="mi">502</span> <span class="bp">self</span><span class="o">.</span><span class="n">outfile</span><span class="p">,</span> <span class="n">save_all</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">append_images</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">_frames</span><span class="p">[</span><span class="mi">1</span><span class="p">:],</span>
<span class="g g-Whitespace"> </span><span class="mi">503</span> <span class="n">duration</span><span class="o">=</span><span class="nb">int</span><span class="p">(</span><span class="mi">1000</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">fps</span><span class="p">),</span> <span class="n">loop</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>

<span class="nn">File /opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages/PIL/Image.py:2393,</span> in <span class="ni">Image.save</span><span class="nt">(self, fp, format, **params)</span>
<span class="g g-Whitespace"> </span><span class="mi">2391</span> <span class="k">except</span> <span class="ne">KeyError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
<span class="g g-Whitespace"> </span><span class="mi">2392</span> <span class="n">msg</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;unknown file extension: </span><span class="si">{</span><span class="n">ext</span><span class="si">}</span><span class="s2">&quot;</span>
<span class="ne">-&gt; </span><span class="mi">2393</span> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="n">msg</span><span class="p">)</span> <span class="kn">from</span> <span class="nn">e</span>
<span class="g g-Whitespace"> </span><span class="mi">2395</span> <span class="k">if</span> <span class="nb">format</span><span class="o">.</span><span class="n">upper</span><span class="p">()</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">SAVE</span><span class="p">:</span>
<span class="g g-Whitespace"> </span><span class="mi">2396</span> <span class="n">init</span><span class="p">()</span>
<span class="nn">File /opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages/PIL/Image.py:2419,</span> in <span class="ni">Image.save</span><span class="nt">(self, fp, format, **params)</span>
<span class="g g-Whitespace"> </span><span class="mi">2417</span> <span class="k">except</span> <span class="ne">KeyError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
<span class="g g-Whitespace"> </span><span class="mi">2418</span> <span class="n">msg</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;unknown file extension: </span><span class="si">{</span><span class="n">ext</span><span class="si">}</span><span class="s2">&quot;</span>
<span class="ne">-&gt; </span><span class="mi">2419</span> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="n">msg</span><span class="p">)</span> <span class="kn">from</span> <span class="nn">e</span>
<span class="g g-Whitespace"> </span><span class="mi">2421</span> <span class="k">if</span> <span class="nb">format</span><span class="o">.</span><span class="n">upper</span><span class="p">()</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">SAVE</span><span class="p">:</span>
<span class="g g-Whitespace"> </span><span class="mi">2422</span> <span class="n">init</span><span class="p">()</span>

<span class="ne">ValueError</span>: unknown file extension: .mp4
</pre></div>
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4 changes: 2 additions & 2 deletions blog/interpolation.html
Original file line number Diff line number Diff line change
Expand Up @@ -713,7 +713,7 @@ <h3>Estimate the value of f at t=2.<a class="headerlink" href="#estimate-the-val
</div>
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>0.13533528323661267
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>0.1353352832366127
</pre></div>
</div>
</div>
Expand All @@ -731,7 +731,7 @@ <h3>Improved interpolation?<a class="headerlink" href="#improved-interpolation"
</div>
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>0.1084818181818181
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>0.10848181818181811
[0.10848182 0.0498 0.08428727]
</pre></div>
</div>
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20 changes: 11 additions & 9 deletions blog/linear-algebra.html
Original file line number Diff line number Diff line change
Expand Up @@ -996,7 +996,7 @@ <h2>Solving linear equations<a class="headerlink" href="#solving-linear-equation
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Singular values: [27.63016717 21.49453733 1.5996022 ]
# of independent rows: 3
Singular values: [6.02105520e+01 1.63994657e+00 1.72274992e-15]
Singular values: [60.21055203 1.63994657 0. ]
# of independent rows: 2
</pre></div>
</div>
Expand Down Expand Up @@ -1281,7 +1281,7 @@ <h3>Another example<a class="headerlink" href="#another-example" title="Permalin
</div>
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>162.39
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>162.39000000000001
</pre></div>
</div>
</div>
Expand All @@ -1306,7 +1306,7 @@ <h3>Last example<a class="headerlink" href="#last-example" title="Permalink to t
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>57.71
57.71
57.71000000000001
</pre></div>
</div>
</div>
Expand Down Expand Up @@ -1355,8 +1355,8 @@ <h2>Determining linear independence of a set of vectors<a class="headerlink" hre
</div>
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[2.75209239e+01 9.30584482e+00 1.15680550e-15]
2
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[2.75209239e+01 9.30584482e+00 1.42425400e-15]
3
2
</pre></div>
</div>
Expand Down Expand Up @@ -1386,7 +1386,7 @@ <h2>Determining linear independence of a set of vectors<a class="headerlink" hre
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[ 2. -3.]
</pre></div>
</div>
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_2035/1461910281.py:2: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_2114/1461910281.py:2: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.
To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`.
x = np.linalg.lstsq(A, v3)
</pre></div>
Expand Down Expand Up @@ -1486,13 +1486,15 @@ <h3>Application to independent chemical reactions.<a class="headerlink" href="#a
</div>
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[3.84742803e+00 3.32555975e+00 1.46217301e+00 4.11005892e-16
2.03581371e-17]
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[3.84742803e+00 3.32555975e+00 1.46217301e+00 1.03409112e-16
0.00000000e+00]
3
</pre></div>
</div>
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Matrix([[1, 0, 0, 2, -2], [0, 1, 0, 1, -1], [0, 0, 1, -2, 0], [0, 0, 0, 0, 0], [0, 0, 0, 0, 0], [0, 0, 0, 0, 0]])
0 = +1H2 +2Br -2HBr
</pre></div>
</div>
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>0 = +1H2 +2Br -2HBr
0 = +1H +1Br -1HBr
0 = +1Br2 -2Br
</pre></div>
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