Use OrdinaryDiffEqTsit5 in tests #370
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| name: CI | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: | |
| - master | |
| push: | |
| branches: | |
| - master | |
| tags: '*' | |
| jobs: | |
| test: | |
| name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }} | |
| runs-on: ${{ matrix.os }} | |
| continue-on-error: ${{ matrix.experimental }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| experimental: [false] | |
| version: | |
| - '1.9' | |
| - '1.10' | |
| os: | |
| - ubuntu-latest | |
| arch: | |
| - x64 | |
| include: | |
| - version: 'pre' | |
| os: ubuntu-latest | |
| arch: x64 | |
| experimental: true | |
| steps: | |
| - name: Install libraries | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install mpich libmpich-dev libhdf5-mpich-dev libcurl4-openssl-dev | |
| - uses: actions/checkout@v4 | |
| - uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: ${{ matrix.version }} | |
| arch: ${{ matrix.arch }} | |
| - uses: julia-actions/cache@v2 | |
| with: | |
| cache-registries: "true" | |
| - uses: julia-actions/julia-buildpkg@v1 | |
| - name: Add MPIPreferences | |
| shell: julia --color=yes --project=test {0} | |
| run: | | |
| using Pkg | |
| Pkg.add("MPIPreferences") | |
| - name: Use system MPI + HDF5 | |
| shell: julia --color=yes --project=test {0} | |
| run: | | |
| using MPIPreferences, HDF5 | |
| MPIPreferences.use_system_binary() | |
| HDF5.API.set_libraries!("/usr/lib/x86_64-linux-gnu/hdf5/mpich/libhdf5.so", "/usr/lib/x86_64-linux-gnu/hdf5/mpich/libhdf5_hl.so") | |
| # This is to fix issue when loading system HDF5. We need to use the system libcurl instead of Julia's. | |
| # Note: LD_PRELOAD needs to be set here *and not before*, otherwise precompilation fails. | |
| - name: Update LD_PRELOAD for system HDF5 | |
| # https://docs.github.com/en/actions/using-workflows/workflow-commands-for-github-actions#setting-an-environment-variable | |
| run: echo "LD_PRELOAD=/usr/lib/x86_64-linux-gnu/libcurl.so.4" >> "$GITHUB_ENV" | |
| # This is to avoid precompilation in parallel when using MPI | |
| - name: Precompile test/ | |
| shell: julia --color=yes --project=test {0} | |
| run: | | |
| using Pkg | |
| Pkg.instantiate(verbose = true) | |
| Pkg.precompile(strict = false) | |
| - uses: julia-actions/julia-runtest@v1 | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| files: lcov.info | |
| docs: | |
| name: Documentation | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Install libraries | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install mpich libmpich-dev libhdf5-mpich-dev libcurl4-openssl-dev | |
| - uses: actions/checkout@v4 | |
| - uses: julia-actions/setup-julia@latest | |
| with: | |
| version: '1.10' | |
| - name: Add MPIPreferences + Preferences + UUIDs | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.add("MPIPreferences") | |
| Pkg.add("Preferences") | |
| Pkg.add("UUIDs") | |
| - name: Use system MPI + HDF5 | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using MPIPreferences, Preferences, UUIDs | |
| MPIPreferences.use_system_binary() | |
| Preferences.set_preferences!( | |
| UUID("f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f"), # UUID of HDF5.jl | |
| "libhdf5" => "/usr/lib/x86_64-linux-gnu/hdf5/mpich/libhdf5.so", | |
| "libhdf5_hl" => "/usr/lib/x86_64-linux-gnu/hdf5/mpich/libhdf5_hl.so"; | |
| force = true, | |
| ) | |
| - name: Install docs dependencies | |
| run: | | |
| julia --project=docs -e ' | |
| using Pkg | |
| Pkg.develop(PackageSpec(path=pwd())) | |
| Pkg.instantiate()' | |
| - name: Build and deploy | |
| run: julia --project=docs docs/make.jl | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }} | |
| # vim: shiftwidth=2 |