Delete SHH profiles due to decommissioning

jingydz · Aug 20, 2021 · 59af7f0 · 59af7f0
1 parent 5c9896b
commit 59af7f0
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Showing 8 changed files with 1 addition and 312 deletions.
diff --git a/README.md b/README.md
@@ -127,7 +127,6 @@ Currently documentation is available for the following systems:
 * [PRINCE](docs/prince.md)
 * [SANGER](docs/sanger.md)
 * [SEG_GLOBE](docs/seg_globe.md)
-* [SHH](docs/shh.md)
 * [UCT_HPC](docs/uct_hpc.md)
 * [UPPMAX](docs/uppmax.md)
 * [UTD_GANYMEDE](docs/utd_ganymede.md)
@@ -180,7 +179,6 @@ Currently documentation is available for the following pipelines within specific
   * [BINAC](docs/pipeline/ampliseq/binac.md)
   * [UPPMAX](docs/pipeline/ampliseq/uppmax.md)
 * eager
-  * [SHH](docs/pipeline/eager/shh.md)
   * [EVA](docs/pipeline/eager/eva.md)
 * rnafusion
   * [MUNIN](docs/pipeline/rnafusion/munin.md)

diff --git a/conf/pipeline/eager/shh.config b/conf/pipeline/eager/shh.config
diff --git a/conf/shh.config b/conf/shh.config
diff --git a/docs/pipeline/eager/shh.md b/docs/pipeline/eager/shh.md
diff --git a/docs/shh.md b/docs/shh.md
diff --git a/nextflow.config b/nextflow.config
@@ -1 +1 @@
-includeConfig("nfcore_custom.config")
+includeConfig("nfcore_custom.config")
diff --git a/nfcore_custom.config b/nfcore_custom.config
@@ -48,7 +48,6 @@ profiles {
   prince       { includeConfig "${params.custom_config_base}/conf/prince.config" }
   sanger       { includeConfig "${params.custom_config_base}/conf/sanger.config"}
   seg_globe    { includeConfig "${params.custom_config_base}/conf/seg_globe.config"}
-  shh          { includeConfig "${params.custom_config_base}/conf/shh.config" }
   uct_hpc      { includeConfig "${params.custom_config_base}/conf/uct_hpc.config" }
   uppmax       { includeConfig "${params.custom_config_base}/conf/uppmax.config" }
   utd_ganymede { includeConfig "${params.custom_config_base}/conf/utd_ganymede.config" }

diff --git a/pipeline/eager.config b/pipeline/eager.config
@@ -9,7 +9,6 @@
  */
 
 profiles {
-  shh { includeConfig "${params.custom_config_base}/conf/pipeline/eager/shh.config" }
   mpcdf { includeConfig "${params.custom_config_base}/conf/pipeline/eager/mpcdf.config" }
   eva { includeConfig "${params.custom_config_base}/conf/pipeline/eager/eva.config" }
 }
Original file line number	Diff line number	Diff line change
		@@ -1 +1 @@
		includeConfig("nfcore_custom.config")
		includeConfig("nfcore_custom.config")