Likelihood Calculation Felsenstein #125
Workflow file for this run
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| name: Tests | |
| on: | |
| pull_request: | |
| push: | |
| branches: [main, test] | |
| jobs: | |
| pre-commit: | |
| name: Lint | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Cancel Previous Runs | |
| uses: styfle/[email protected] | |
| with: | |
| access_token: ${{ github.token }} | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| - uses: pre-commit/[email protected] | |
| test: | |
| name: Python | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python: [ 3.9, "3.10", "3.11" ] | |
| os: [ macos-13, ubuntu-latest] # disable windows for now, windows-latest ] | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: Cancel Previous Runs | |
| uses: styfle/[email protected] | |
| with: | |
| access_token: ${{ github.token }} | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Setup Python and cache deps | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| cache: 'pip' | |
| cache-dependency-path: requirements/CI.txt | |
| - name: Install pip deps | |
| run: | | |
| pip install -r requirements/CI.txt | |
| - name: Run tests | |
| run: | | |
| coverage run --source=phylokit -m pytest -x -n0 | |
| coverage: | |
| name: Coverage | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Cancel Previous Runs | |
| uses: styfle/[email protected] | |
| with: | |
| access_token: ${{ github.token }} | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Setup Python and cache deps | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| cache: 'pip' | |
| cache-dependency-path: requirements/CI.txt | |
| - name: Install pip deps | |
| run: | | |
| pip install -r requirements/CI.txt | |
| - name: Generate coverage | |
| run: | | |
| PHYLOKIT_DISABLE_NUMBA=1 coverage run --source=phylokit -m pytest -x -n0 | |
| - name: Upload coverage | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| coveralls --service=github |