fix sd analysis

jcrozum · Dec 20, 2023 · 7848219 · 7848219 · github-actions · Dec 20, 2023
1 parent 67d1a87
commit 7848219
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Showing 3 changed files with 10 additions and 10 deletions.
diff --git a/analysis/SD_analysis.py b/analysis/SD_analysis.py
@@ -5,16 +5,16 @@
 import sys
 sys.path.append("..")
 
-import nfvsmotifs
+import balm
 
 from biodivine_aeon import BooleanNetwork
-from nfvsmotifs.SuccessionDiagram import SuccessionDiagram
+from balm.SuccessionDiagram import SuccessionDiagram
 
 
 LOG_LOCATION = "SD_analysis_" + sys.argv[1].split("/")[-2] + ".csv"
 
 # Print progress and succession diagram size.
-nfvsmotifs.SuccessionDiagram.DEBUG = True # type: ignore
+balm.SuccessionDiagram.DEBUG = True # type: ignore
 
 NODE_LIMIT = 1_000_000
 DEPTH_LIMIT = 10_000

diff --git a/analysis/SD_analysis_att.py b/analysis/SD_analysis_att.py
@@ -5,17 +5,17 @@
 import sys
 sys.path.append("..")
 
-import nfvsmotifs
+import balm
 
 from biodivine_aeon import BooleanNetwork
-from nfvsmotifs.SuccessionDiagram import SuccessionDiagram
-from nfvsmotifs._sd_algorithms.expand_source_SCCs import expand_source_SCCs
+from balm.SuccessionDiagram import SuccessionDiagram
+from balm._sd_algorithms.expand_source_SCCs import expand_source_SCCs
 
 
 LOG_LOCATION = "SD_analysis_att_" + sys.argv[1].split("/")[-2] + ".csv"
 
 # Print progress and succession diagram size.
-nfvsmotifs.SuccessionDiagram.DEBUG = True # type: ignore
+balm.SuccessionDiagram.DEBUG = True # type: ignore
 
 # This is unfortunately necessary for PyEDA Boolean expression parser (for now).
 sys.setrecursionlimit(150000)

diff --git a/analysis/SD_analysis_size.py b/analysis/SD_analysis_size.py
@@ -5,16 +5,16 @@
 import sys
 sys.path.append("..")
 
-import nfvsmotifs
+import balm
 
 from biodivine_aeon import BooleanNetwork
-from nfvsmotifs.SuccessionDiagram import SuccessionDiagram
+from balm.SuccessionDiagram import SuccessionDiagram
 
 
 LOG_LOCATION = "SD_analysis_size_" + sys.argv[1].split("/")[-2] + ".csv"
 
 # Print progress and succession diagram size.
-nfvsmotifs.SuccessionDiagram.DEBUG = True # type: ignore
+balm.SuccessionDiagram.DEBUG = True # type: ignore
 
 NODE_LIMIT = 1_000_000
 DEPTH_LIMIT = 10_000
File	Stmts	Miss	Cover	Missing
balm
SuccessionDiagram.py	156	4	97%	6–7, 208, 468
control.py	120	13	89%	47, 56, 60, 66, 80, 89–105, 319, 334
interaction_graph_utils.py	142	8	94%	6–9, 57, 70, 95–96
motif_avoidant.py	163	5	97%	23–24, 130, 184, 309
petri_net_translation.py	84	6	93%	23–24, 52, 63–64, 94
pyeda_utils.py	95	34	64%	12, 56–66, 90, 95, 98–112, 140–144
space_utils.py	145	6	96%	15–16, 189, 218, 233, 290
state_utils.py	68	12	82%	15, 55–66, 98, 105, 114
terminal_restriction_space.py	44	4	91%	6–7, 80, 97
trappist_core.py	186	20	89%	10–11, 39, 41, 81, 127, 192, 194, 196, 231–233, 259, 317, 319, 349, 389, 391, 422, 451
balm/FVSpython3
FVS.py	48	10	79%	93–94, 102, 138, 190–198
FVS_localsearch_10_python.py	90	1	99%	179
balm/_sd_algorithms
compute_attractor_seeds.py	29	1	97%	6
expand_attractor_seeds.py	51	4	92%	6, 95–100
expand_bfs.py	28	1	96%	6
expand_dfs.py	30	1	97%	6
expand_minimal_spaces.py	37	1	97%	6
expand_source_SCCs.py	184	7	96%	84, 94, 137, 160–161, 166, 281
expand_to_target.py	30	3	90%	6, 37, 42
TOTAL	1827	141	92%