track QC drops YAML

jbloomlab · Dec 31, 2023 · f486136 · f486136
1 parent d617045
commit f486136
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diff --git a/test_example/.gitignore b/test_example/.gitignore
@@ -28,3 +28,8 @@ results/sera/*/*
 !results/aggregated_titers
 results/aggregated_titers/*
 !results/aggregated_titers/titers.csv
+
+!results/qc_drops
+results/qc_drops/*
+!results/qc_drops/plate_qc_drops.yml
+!results/qc_drops/sera_qc_drops.yml
diff --git a/test_example/results/qc_drops/plate_qc_drops.yml b/test_example/results/qc_drops/plate_qc_drops.yml
@@ -0,0 +1,26 @@
+plate2:
+  wells: {}
+  barcodes:
+    CATACAGAGTTTGTTG: min_neut_standard_frac_per_well
+  barcode_wells: {}
+  barcode_serum_replicates: {}
+  serum_replicates: {}
+plate11:
+  wells:
+    D6: avg_barcode_counts_per_well
+    C9: min_neut_standard_count_per_well
+    D9: min_neut_standard_count_per_well
+  barcodes:
+    CATACAGAGTTTGTTG: min_neut_standard_frac_per_well
+  barcode_wells:
+    CGGATAAAAATGATAT B12: min_no_serum_count_per_viral_barcode_well
+    ACGGAATCCCCTGAGA B12: min_no_serum_count_per_viral_barcode_well
+    CAGTTCTGCGACCAGC D10: max_frac_infectivity_per_viral_barcode_well
+  barcode_serum_replicates:
+    AGTCCTATCCTCAAAT M099d0: manual_drop
+    ACGACATGATCAAACG M099d0: min_R2
+    CTATTAATCATGCAAA M099d0: min_R2
+    AATAAGTATACGGGAT M099d30: min_R2
+    CCCTATGCTGCGTATT M099d30: min_R2
+    CGGATAAAAATGATAT M099d30: min_R2
+  serum_replicates: {}
diff --git a/test_example/results/qc_drops/sera_qc_drops.yml b/test_example/results/qc_drops/sera_qc_drops.yml
@@ -0,0 +1,9 @@
+M099d0:
+  A/Norway/25089/2022: max_fold_change_from_median
+M099d30: {}
+Y044d30:
+  A/Washington/23/2020: max_fold_change_from_median
+  A/India-PUN-NIV328484/2021: max_fold_change_from_median
+  A/Perth/1/2022: max_fold_change_from_median
+  A/Chester/5355/2022: max_fold_change_from_median
+Y154d182: {}