aggregate and plot QC failures (#22)

* template `aggregate_qc_drops` * plot plate QC n drops * plot times each barcode dropped * complete `aggregate_qc_drops` * add `aggregate_qc_drops` to docs * track QC drops YAML
jbloomlab · Dec 31, 2023 · be9747d · be9747d
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diff --git a/docs/M099d0_titers.html b/docs/M099d0_titers.html
diff --git a/docs/M099d30_titers.html b/docs/M099d30_titers.html
diff --git a/docs/Y044d30_titers.html b/docs/Y044d30_titers.html
diff --git a/docs/Y154d182_titers.html b/docs/Y154d182_titers.html
diff --git a/docs/aggregate_qc_drops.html b/docs/aggregate_qc_drops.html
diff --git a/docs/index.html b/docs/index.html
@@ -8,6 +8,7 @@ <h1 id="test-example-for-seqneut-pipeline">Test example for <a href="https://git
 <li><a href="#titers-for-all-sera">Titers for all sera</a></li>
 <li><a href="#per-serum-neutralization-titers">Per-serum neutralization titers</a></li>
 <li><a href="#per-plate-counts-and-curve-fits">Per-plate counts and curve fits</a></li>
+<li><a href="#summary-of-data-dropped-during-quality-control">Summary of data dropped during quality control</a></li>
 </ul>
 </div>
 <h2 id="titers-for-all-sera">Titers for all sera</h2>
@@ -23,4 +24,6 @@ <h2 id="per-plate-counts-and-curve-fits">Per-plate counts and curve fits</h2>
 <ul>
 <li><a href="process_plate2.html">plate2</a></li>
 <li><a href="process_plate11.html">plate11</a></li>
-</ul>
+</ul>
+<h2 id="summary-of-data-dropped-during-quality-control">Summary of data dropped during quality control</h2>
+<p><a href="aggregate_qc_drops.html">Notebook summarizing QC drops</a></p>
diff --git a/docs/process_plate11.html b/docs/process_plate11.html
diff --git a/docs/process_plate2.html b/docs/process_plate2.html