update doc links to new Bloom lab webpage

README.rst

@@ -16,7 +16,7 @@ polyclonal
 
 Model mutational escape from polyclonal antibodies using deep mutational scanning data.
 
-``polyclonal`` is a Python package written by `the Bloom lab <https://research.fhcrc.org/bloom/en.html>`_.
+``polyclonal`` is a Python package written by `the Bloom lab <https://jbloomlab.org>`_.
 
 See `Yu et al (2022) <https://doi.org/10.1093/ve/veac110>`_ for an explanation of the approach implemented in ``polyclonal``.
 

docs/acknowledgments.rst

@@ -1,6 +1,6 @@
 Acknowledgements
 -----------------
-``polyclonal`` is written by `the Bloom lab <https://research.fhcrc.org/bloom/en.html>`_.
+``polyclonal`` is written by `the Bloom lab <https://jbloomlab.org>`_.
 
 The citation for ``polyclonal`` is `Yu et al (2022) <https://doi.org/10.1093/ve/veac110>`_.
 

docs/conf.py

@@ -67,7 +67,7 @@
 # General information about the project.
 project = "polyclonal"
 copyright = f"2019--{datetime.datetime.now().year}"  # noqa: A001
-author = "`the Bloom lab <https://research.fhcrc.org/bloom/en.html>`_"
+author = "`the Bloom lab <https://jbloomlab.org/>`_"
 
 # The version info for the project you're documenting, acts as replacement for
 # |version| and |release|, also used in various other places throughout the
@@ -192,7 +192,7 @@
         master_doc,
         "polyclonal.tex",
         "polyclonal Documentation",
-        "`the Bloom lab <https://research.fhcrc.org/bloom/en.html>`_",
+        "`the Bloom lab <https://jbloomlab.org>`_",
         "manual",
     ),
 ]

docs/index.rst

@@ -3,7 +3,7 @@
 
 ``polyclonal`` is a Python package for modeling mutational escape from polyclonal antibodies using deep mutational scanning data.
 
-It is written by `the Bloom lab <https://research.fhcrc.org/bloom/en.html>`_.
+It is written by `the Bloom lab <https://jbloomlab.org>`_.
 
 See `Yu et al (2022) <https://doi.org/10.1093/ve/veac110>`_ for an explanation of the approach implemented in ``polyclonal``.