Skip to content

Commit

Permalink
remove apparently obsolete gnuplot color map
Browse files Browse the repository at this point in the history
  • Loading branch information
jbloom committed Apr 10, 2024
1 parent b008de9 commit 2f681af
Show file tree
Hide file tree
Showing 2 changed files with 1 addition and 2 deletions.
2 changes: 1 addition & 1 deletion CHANGELOG.rst
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@ The format is based on `Keep a Changelog <https://keepachangelog.com>`_.
1.6.0
-----
- Added ability to parse second upstream / downstream region in ``IlluminaBarcodeParser`` by adding ``upstream2`` and ``downstream2`` parameters. Also modified ``IlluminaBarcodeParser`` so that reads will only be parsed if they are long enough to fully cover the region containing the barcodes and specified upstream / downstream sequences. Based on docs, this is how it was supposed to function before but did not. Additionally, this adds another row ("reads too short") to the fates from the barcode parser, as well as the ``outer_flank_fates`` option to report just failing the additional upstream and downstream regions.

- Change default color of heatmaps made by ``CodonVariantTable`` due to current one being obsolete.
- Remove obsolete ``guide=False`` from some ``plotnine`` plots in examples / tests (this was removed in ``plotnine`` version 0.13).

1.5.0
Expand Down
1 change: 0 additions & 1 deletion dms_variants/codonvarianttable.py
Original file line number Diff line number Diff line change
Expand Up @@ -1934,7 +1934,6 @@ def plotMutHeatmap(
expand=(0, 0),
)
+ p9.ylab(mut_desc)
+ p9.scale_fill_cmap("gnuplot")
)

if samples is None:
Expand Down

0 comments on commit 2f681af

Please sign in to comment.