updates to pass tests w newer program versions (`pandas`, `black`, etc) #2

	name: Run tests

	on:
	push:
	branches:
	- master
	pull_request:
	branches:
	- master

	jobs:
	test:
	name: Run tests
	runs-on: ubuntu-latest
	timeout-minutes: 60
	steps:
	- name: checkout
	uses: actions/checkout@v4

	- name: build conda environment
	uses: conda-incubator/setup-miniconda@v3
	with:
	activate-environment: alignparse
	environment-file: environment.yml
	auto-activate-base: false
	auto-update-conda: true
	channel-priority: strict

	- name: install package and dependencies
	# NOTE: must specify the shell so that conda init updates bashrc see:
	# https://github.com/conda-incubator/setup-miniconda#IMPORTANT
	shell: bash -el {0}
	run: pip install -e . && pip install -r test_requirements.txt

	- name: lint code with ruff
	shell: bash -el {0}
	run: ruff check .

	- name: check code format with black
	shell: bash -el {0}
	run: black --check .

	- name: test code with `pytest`
	shell: bash -el {0}
	run: pytest

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