Skip to content

jasonpell/khmer

 
 

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Welcome to khmer, k-mer counting, filtering and graph traversal FTW!

As of August 2011, there's a khmer mailing list at librelist.com that
you can use to get help with khmer.  To sign up, just shoot
'[email protected]' an e-mail and it will subscribe you; then send
your question/comment there.

IMPORTANT NOTE:

khmer is *pre-publication* and *research* software, so please keep in
mind that (a) the code may have undiscovered bugs in it, (b) you
should cite us, and (c) you should get in touch if you need to cite
us, as we are writing up the project.

INSTRUCTIONS:

'make all' to build.

'cd python && python setup.py test' to test (OR set PYTHONPATH, 'make test').

'make doc' to build docs.  You'll need Sphinx installed.

khmer is under the BSD license; see doc/LICENSE.txt.  Distribution,
modification and redistribution, incorporation into other software,
and pretty much everything else is allowed.

CTB 8/2011.

About

in-memory k-mer counting

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages

  • C 47.3%
  • Python 22.4%
  • C++ 10.1%
  • Assembly 7.8%
  • Ada 4.9%
  • C# 3.0%
  • Other 4.5%