Update 12_reordering_genomes_mauve.pbs

ireneortega · Dec 13, 2024 · 53b17f9 · 53b17f9
1 parent c99921b
commit 53b17f9
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scripts/12_reordering_genomes_mauve.pbs b/scripts/12_reordering_genomes_mauve.pbs
@@ -17,7 +17,7 @@ do
    isolate=$(basename $genome .fasta)
    echo Reordering $isolate
 
-   java -Xmx500m -cp /kyukon/home/gent/476/vsc47636/mauve_snapshot_2015-02-13/Mauve.jar org.gel.mauve.contigs.ContigOrderer -output $isolate -draft $genome -ref ./SA/01_data_analysis/NCTC8325.fasta
+   java -Xmx500m -cp ./mauve_snapshot_2015-02-13/Mauve.jar org.gel.mauve.contigs.ContigOrderer -output $isolate -draft $genome -ref ./SA/01_data_analysis/NCTC8325.fasta
 
 done