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Coverage QC stats #80

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Coverage QC stats #80

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Commits on Oct 16, 2020

  1. Clobber (and warn about) existing output directories instead of raisi… 

    …ng exception.
    @jeff-k
    jeff-k committed Oct 16, 2020
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  2. pin openpyxl to 2.5.0, newer versions break tests

    @jeff-k
    jeff-k committed Oct 16, 2020
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  3. QC: database migrations and function stubs for counting coverage at d… 

    …epth thresholds
    @jeff-k
    jeff-k committed Oct 16, 2020
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  4. measure coverage for lower thresholds, implement samtools depth stats… 

    … collection
    @jeff-k
    jeff-k committed Oct 16, 2020
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Commits on Oct 21, 2020

  1. Fixes for depth stats, additional test

    @jeff-k
    jeff-k committed Oct 21, 2020
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Commits on Nov 12, 2020

  1. fix sql syntax error from copy+pasting

    @jeff-k
    jeff-k committed Nov 12, 2020
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  2. Merge branch 'clobber_output_dir' into coverage_qc

    @jeff-k
    jeff-k committed Nov 12, 2020
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  3. Merge branch 'master' into coverage_qc

    @martinghunt
    martinghunt committed Nov 12, 2020
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Commits on Nov 13, 2020

  1. Fix samtools_qc tests

    @martinghunt
    martinghunt committed Nov 13, 2020
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  2. Fix db_test to have new QC depth stats

    @martinghunt
    martinghunt committed Nov 13, 2020
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  3. Get nextflow_qc tests to pass

    @martinghunt
    martinghunt committed Nov 13, 2020
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  4. Merge branch 'master' of github.com:martinghunt/clockwork into covera… 

    …ge_qc
    @jeff-k
    jeff-k committed Nov 13, 2020
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  5. Merge branch 'coverage_qc' of github.com:martinghunt/clockwork into c… 

    …overage_qc
    @jeff-k
    jeff-k committed Nov 13, 2020
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