Skip to content

Commit

Permalink
install the version of pypam 0.3.2
Browse files Browse the repository at this point in the history
  • Loading branch information
cparcerisas committed Sep 24, 2024
1 parent c4ed562 commit 05988ff
Showing 1 changed file with 245 additions and 3 deletions.
248 changes: 245 additions & 3 deletions 2_analysis_of_HMD_pypam/data_analysis_with_pypam.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -28,16 +28,258 @@
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 1,
"id": "83bdf862-0a38-4b1f-844a-cc72a7ce5307",
"metadata": {
"scrolled": true,
"tags": []
},
"outputs": [],
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": []
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"Requirement already satisfied: pvlib in /opt/conda/lib/python3.11/site-packages (0.11.0)\n",
"Requirement already satisfied: numpy>=1.17.3 in /opt/conda/lib/python3.11/site-packages (from pvlib) (1.24.4)\n",
"Requirement already satisfied: pandas>=1.3.0 in /opt/conda/lib/python3.11/site-packages (from pvlib) (2.2.2)\n",
"Requirement already satisfied: pytz in /opt/conda/lib/python3.11/site-packages (from pvlib) (2023.3)\n",
"Requirement already satisfied: requests in /opt/conda/lib/python3.11/site-packages (from pvlib) (2.32.3)\n",
"Requirement already satisfied: scipy>=1.6.0 in /opt/conda/lib/python3.11/site-packages (from pvlib) (1.10.0)\n",
"Requirement already satisfied: h5py in /opt/conda/lib/python3.11/site-packages (from pvlib) (3.11.0)\n",
"Requirement already satisfied: python-dateutil>=2.8.2 in /opt/conda/lib/python3.11/site-packages (from pandas>=1.3.0->pvlib) (2.8.2)\n",
"Requirement already satisfied: tzdata>=2022.7 in /opt/conda/lib/python3.11/site-packages (from pandas>=1.3.0->pvlib) (2024.1)\n",
"Requirement already satisfied: charset-normalizer<4,>=2 in /opt/conda/lib/python3.11/site-packages (from requests->pvlib) (3.3.2)\n",
"Requirement already satisfied: idna<4,>=2.5 in /opt/conda/lib/python3.11/site-packages (from requests->pvlib) (3.7)\n",
"Requirement already satisfied: urllib3<3,>=1.21.1 in /opt/conda/lib/python3.11/site-packages (from requests->pvlib) (2.2.1)\n",
"Requirement already satisfied: certifi>=2017.4.17 in /opt/conda/lib/python3.11/site-packages (from requests->pvlib) (2023.11.17)\n",
"Requirement already satisfied: six>=1.5 in /opt/conda/lib/python3.11/site-packages (from python-dateutil>=2.8.2->pandas>=1.3.0->pvlib) (1.16.0)\n",
"Requirement already satisfied: lifewatch-pypam==0.3.2 in /opt/conda/lib/python3.11/site-packages (0.3.2)\n",
"Requirement already satisfied: dask<2024.0.0,>=2023.0.0 in /opt/conda/lib/python3.11/site-packages (from lifewatch-pypam==0.3.2) (2023.12.1)\n",
"Requirement already satisfied: matplotlib<4.0.0,>=3.7.1 in /opt/conda/lib/python3.11/site-packages (from lifewatch-pypam==0.3.2) (3.8.4)\n",
"Requirement already satisfied: netcdf4<2.0.0,>=1.6.4 in /opt/conda/lib/python3.11/site-packages (from lifewatch-pypam==0.3.2) (1.7.1.post2)\n",
"Requirement already satisfied: noisereduce<3.0.0,>=2.0.1 in /opt/conda/lib/python3.11/site-packages (from lifewatch-pypam==0.3.2) (2.0.1)\n",
"Requirement already satisfied: numba<0.58.0,>=0.57.0 in /opt/conda/lib/python3.11/site-packages (from lifewatch-pypam==0.3.2) (0.57.1)\n",
"Requirement already satisfied: numpy<2.0.0,>=1.24.3 in /opt/conda/lib/python3.11/site-packages (from lifewatch-pypam==0.3.2) (1.24.4)\n",
"Requirement already satisfied: openpyxl<4.0.0,>=3.1.5 in /opt/conda/lib/python3.11/site-packages (from lifewatch-pypam==0.3.2) (3.1.5)\n",
"Requirement already satisfied: pandas<3.0.0,>=2.0.2 in /opt/conda/lib/python3.11/site-packages (from lifewatch-pypam==0.3.2) (2.2.2)\n",
"Requirement already satisfied: pvlib<0.12.0,>=0.11.0 in /opt/conda/lib/python3.11/site-packages (from lifewatch-pypam==0.3.2) (0.11.0)\n",
"Requirement already satisfied: pyhydrophone<0.2.0,>=0.1.7 in /opt/conda/lib/python3.11/site-packages (from lifewatch-pypam==0.3.2) (0.1.7)\n",
"Requirement already satisfied: python-dateutil<3.0.0,>=2.8.2 in /opt/conda/lib/python3.11/site-packages (from lifewatch-pypam==0.3.2) (2.8.2)\n",
"Requirement already satisfied: scikit-learn<2.0.0,>=1.2.2 in /opt/conda/lib/python3.11/site-packages (from lifewatch-pypam==0.3.2) (1.4.2)\n",
"Requirement already satisfied: scikit-maad<2.0.0,>=1.4.3 in /opt/conda/lib/python3.11/site-packages (from lifewatch-pypam==0.3.2) (1.4.3)\n",
"Requirement already satisfied: seaborn==0.13.0 in /opt/conda/lib/python3.11/site-packages (from lifewatch-pypam==0.3.2) (0.13.0)\n",
"Requirement already satisfied: soundfile<0.13.0,>=0.12.1 in /opt/conda/lib/python3.11/site-packages (from lifewatch-pypam==0.3.2) (0.12.1)\n",
"Requirement already satisfied: syrupy<5.0.0,>=4.0.4 in /opt/conda/lib/python3.11/site-packages (from lifewatch-pypam==0.3.2) (4.7.1)\n",
"Requirement already satisfied: tqdm<5.0.0,>=4.65.0 in /opt/conda/lib/python3.11/site-packages (from lifewatch-pypam==0.3.2) (4.66.4)\n",
"Requirement already satisfied: xarray==2023.8.0 in /opt/conda/lib/python3.11/site-packages (from lifewatch-pypam==0.3.2) (2023.8.0)\n",
"Requirement already satisfied: packaging>=21.3 in /opt/conda/lib/python3.11/site-packages (from xarray==2023.8.0->lifewatch-pypam==0.3.2) (24.0)\n",
"Requirement already satisfied: click>=8.1 in /opt/conda/lib/python3.11/site-packages (from dask<2024.0.0,>=2023.0.0->lifewatch-pypam==0.3.2) (8.1.7)\n",
"Requirement already satisfied: cloudpickle>=1.5.0 in /opt/conda/lib/python3.11/site-packages (from dask<2024.0.0,>=2023.0.0->lifewatch-pypam==0.3.2) (3.0.0)\n",
"Requirement already satisfied: fsspec>=2021.09.0 in /opt/conda/lib/python3.11/site-packages (from dask<2024.0.0,>=2023.0.0->lifewatch-pypam==0.3.2) (2023.6.0)\n",
"Requirement already satisfied: partd>=1.2.0 in /opt/conda/lib/python3.11/site-packages (from dask<2024.0.0,>=2023.0.0->lifewatch-pypam==0.3.2) (1.4.2)\n",
"Requirement already satisfied: pyyaml>=5.3.1 in /opt/conda/lib/python3.11/site-packages (from dask<2024.0.0,>=2023.0.0->lifewatch-pypam==0.3.2) (6.0)\n",
"Requirement already satisfied: toolz>=0.10.0 in /opt/conda/lib/python3.11/site-packages (from dask<2024.0.0,>=2023.0.0->lifewatch-pypam==0.3.2) (0.12.1)\n",
"Requirement already satisfied: importlib-metadata>=4.13.0 in /opt/conda/lib/python3.11/site-packages (from dask<2024.0.0,>=2023.0.0->lifewatch-pypam==0.3.2) (7.1.0)\n",
"Requirement already satisfied: contourpy>=1.0.1 in /opt/conda/lib/python3.11/site-packages (from matplotlib<4.0.0,>=3.7.1->lifewatch-pypam==0.3.2) (1.2.1)\n",
"Requirement already satisfied: cycler>=0.10 in /opt/conda/lib/python3.11/site-packages (from matplotlib<4.0.0,>=3.7.1->lifewatch-pypam==0.3.2) (0.12.1)\n",
"Requirement already satisfied: fonttools>=4.22.0 in /opt/conda/lib/python3.11/site-packages (from matplotlib<4.0.0,>=3.7.1->lifewatch-pypam==0.3.2) (4.51.0)\n",
"Requirement already satisfied: kiwisolver>=1.3.1 in /opt/conda/lib/python3.11/site-packages (from matplotlib<4.0.0,>=3.7.1->lifewatch-pypam==0.3.2) (1.4.5)\n",
"Requirement already satisfied: pillow>=8 in /opt/conda/lib/python3.11/site-packages (from matplotlib<4.0.0,>=3.7.1->lifewatch-pypam==0.3.2) (10.3.0)\n",
"Requirement already satisfied: pyparsing>=2.3.1 in /opt/conda/lib/python3.11/site-packages (from matplotlib<4.0.0,>=3.7.1->lifewatch-pypam==0.3.2) (3.1.2)\n",
"Requirement already satisfied: cftime in /opt/conda/lib/python3.11/site-packages (from netcdf4<2.0.0,>=1.6.4->lifewatch-pypam==0.3.2) (1.6.4)\n",
"Requirement already satisfied: certifi in /opt/conda/lib/python3.11/site-packages (from netcdf4<2.0.0,>=1.6.4->lifewatch-pypam==0.3.2) (2023.11.17)\n",
"Requirement already satisfied: scipy in /opt/conda/lib/python3.11/site-packages (from noisereduce<3.0.0,>=2.0.1->lifewatch-pypam==0.3.2) (1.10.0)\n",
"Requirement already satisfied: librosa in /opt/conda/lib/python3.11/site-packages (from noisereduce<3.0.0,>=2.0.1->lifewatch-pypam==0.3.2) (0.10.2.post1)\n",
"Requirement already satisfied: llvmlite<0.41,>=0.40.0dev0 in /opt/conda/lib/python3.11/site-packages (from numba<0.58.0,>=0.57.0->lifewatch-pypam==0.3.2) (0.40.1)\n",
"Requirement already satisfied: et-xmlfile in /opt/conda/lib/python3.11/site-packages (from openpyxl<4.0.0,>=3.1.5->lifewatch-pypam==0.3.2) (1.1.0)\n",
"Requirement already satisfied: pytz>=2020.1 in /opt/conda/lib/python3.11/site-packages (from pandas<3.0.0,>=2.0.2->lifewatch-pypam==0.3.2) (2023.3)\n",
"Requirement already satisfied: tzdata>=2022.7 in /opt/conda/lib/python3.11/site-packages (from pandas<3.0.0,>=2.0.2->lifewatch-pypam==0.3.2) (2024.1)\n",
"Requirement already satisfied: requests in /opt/conda/lib/python3.11/site-packages (from pvlib<0.12.0,>=0.11.0->lifewatch-pypam==0.3.2) (2.32.3)\n",
"Requirement already satisfied: h5py in /opt/conda/lib/python3.11/site-packages (from pvlib<0.12.0,>=0.11.0->lifewatch-pypam==0.3.2) (3.11.0)\n",
"Requirement already satisfied: coverage<8.0.0,>=7.2.5 in /opt/conda/lib/python3.11/site-packages (from pyhydrophone<0.2.0,>=0.1.7->lifewatch-pypam==0.3.2) (7.6.1)\n",
"Requirement already satisfied: pytest<8.0.0,>=7.3.1 in /opt/conda/lib/python3.11/site-packages (from pyhydrophone<0.2.0,>=0.1.7->lifewatch-pypam==0.3.2) (7.4.4)\n",
"Requirement already satisfied: pytest-cov<5.0.0,>=4.1.0 in /opt/conda/lib/python3.11/site-packages (from pyhydrophone<0.2.0,>=0.1.7->lifewatch-pypam==0.3.2) (4.1.0)\n",
"Requirement already satisfied: python-dotenv<2.0.0,>=1.0.0 in /opt/conda/lib/python3.11/site-packages (from pyhydrophone<0.2.0,>=0.1.7->lifewatch-pypam==0.3.2) (1.0.1)\n",
"Requirement already satisfied: six>=1.5 in /opt/conda/lib/python3.11/site-packages (from python-dateutil<3.0.0,>=2.8.2->lifewatch-pypam==0.3.2) (1.16.0)\n",
"Requirement already satisfied: joblib>=1.2.0 in /opt/conda/lib/python3.11/site-packages (from scikit-learn<2.0.0,>=1.2.2->lifewatch-pypam==0.3.2) (1.4.2)\n",
"Requirement already satisfied: threadpoolctl>=2.0.0 in /opt/conda/lib/python3.11/site-packages (from scikit-learn<2.0.0,>=1.2.2->lifewatch-pypam==0.3.2) (3.5.0)\n",
"Requirement already satisfied: scikit-image>=0.19 in /opt/conda/lib/python3.11/site-packages (from scikit-maad<2.0.0,>=1.4.3->lifewatch-pypam==0.3.2) (0.22.0)\n",
"Requirement already satisfied: resampy>=0.4 in /opt/conda/lib/python3.11/site-packages (from scikit-maad<2.0.0,>=1.4.3->lifewatch-pypam==0.3.2) (0.4.3)\n",
"Requirement already satisfied: cffi>=1.0 in /opt/conda/lib/python3.11/site-packages (from soundfile<0.13.0,>=0.12.1->lifewatch-pypam==0.3.2) (1.16.0)\n",
"Requirement already satisfied: pycparser in /opt/conda/lib/python3.11/site-packages (from cffi>=1.0->soundfile<0.13.0,>=0.12.1->lifewatch-pypam==0.3.2) (2.22)\n",
"Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.11/site-packages (from importlib-metadata>=4.13.0->dask<2024.0.0,>=2023.0.0->lifewatch-pypam==0.3.2) (3.17.0)\n",
"Requirement already satisfied: locket in /opt/conda/lib/python3.11/site-packages (from partd>=1.2.0->dask<2024.0.0,>=2023.0.0->lifewatch-pypam==0.3.2) (1.0.0)\n",
"Requirement already satisfied: iniconfig in /opt/conda/lib/python3.11/site-packages (from pytest<8.0.0,>=7.3.1->pyhydrophone<0.2.0,>=0.1.7->lifewatch-pypam==0.3.2) (2.0.0)\n",
"Requirement already satisfied: pluggy<2.0,>=0.12 in /opt/conda/lib/python3.11/site-packages (from pytest<8.0.0,>=7.3.1->pyhydrophone<0.2.0,>=0.1.7->lifewatch-pypam==0.3.2) (1.5.0)\n",
"Requirement already satisfied: charset-normalizer<4,>=2 in /opt/conda/lib/python3.11/site-packages (from requests->pvlib<0.12.0,>=0.11.0->lifewatch-pypam==0.3.2) (3.3.2)\n",
"Requirement already satisfied: idna<4,>=2.5 in /opt/conda/lib/python3.11/site-packages (from requests->pvlib<0.12.0,>=0.11.0->lifewatch-pypam==0.3.2) (3.7)\n",
"Requirement already satisfied: urllib3<3,>=1.21.1 in /opt/conda/lib/python3.11/site-packages (from requests->pvlib<0.12.0,>=0.11.0->lifewatch-pypam==0.3.2) (2.2.1)\n",
"Requirement already satisfied: networkx>=2.8 in /opt/conda/lib/python3.11/site-packages (from scikit-image>=0.19->scikit-maad<2.0.0,>=1.4.3->lifewatch-pypam==0.3.2) (3.3)\n",
"Requirement already satisfied: imageio>=2.27 in /opt/conda/lib/python3.11/site-packages (from scikit-image>=0.19->scikit-maad<2.0.0,>=1.4.3->lifewatch-pypam==0.3.2) (2.34.1)\n",
"Requirement already satisfied: tifffile>=2022.8.12 in /opt/conda/lib/python3.11/site-packages (from scikit-image>=0.19->scikit-maad<2.0.0,>=1.4.3->lifewatch-pypam==0.3.2) (2024.5.10)\n",
"Requirement already satisfied: lazy_loader>=0.3 in /opt/conda/lib/python3.11/site-packages (from scikit-image>=0.19->scikit-maad<2.0.0,>=1.4.3->lifewatch-pypam==0.3.2) (0.4)\n",
"Requirement already satisfied: audioread>=2.1.9 in /opt/conda/lib/python3.11/site-packages (from librosa->noisereduce<3.0.0,>=2.0.1->lifewatch-pypam==0.3.2) (3.0.1)\n",
"Requirement already satisfied: decorator>=4.3.0 in /opt/conda/lib/python3.11/site-packages (from librosa->noisereduce<3.0.0,>=2.0.1->lifewatch-pypam==0.3.2) (5.1.1)\n",
"Requirement already satisfied: pooch>=1.1 in /opt/conda/lib/python3.11/site-packages (from librosa->noisereduce<3.0.0,>=2.0.1->lifewatch-pypam==0.3.2) (1.8.2)\n",
"Requirement already satisfied: soxr>=0.3.2 in /opt/conda/lib/python3.11/site-packages (from librosa->noisereduce<3.0.0,>=2.0.1->lifewatch-pypam==0.3.2) (0.5.0.post1)\n",
"Requirement already satisfied: typing-extensions>=4.1.1 in /opt/conda/lib/python3.11/site-packages (from librosa->noisereduce<3.0.0,>=2.0.1->lifewatch-pypam==0.3.2) (4.11.0)\n",
"Requirement already satisfied: msgpack>=1.0 in /opt/conda/lib/python3.11/site-packages (from librosa->noisereduce<3.0.0,>=2.0.1->lifewatch-pypam==0.3.2) (1.0.8)\n",
"Requirement already satisfied: platformdirs>=2.5.0 in /opt/conda/lib/python3.11/site-packages (from pooch>=1.1->librosa->noisereduce<3.0.0,>=2.0.1->lifewatch-pypam==0.3.2) (4.2.2)\n",
"Requirement already satisfied: minio in /opt/conda/lib/python3.11/site-packages (7.2.8)\n",
"Requirement already satisfied: certifi in /opt/conda/lib/python3.11/site-packages (from minio) (2023.11.17)\n",
"Requirement already satisfied: urllib3 in /opt/conda/lib/python3.11/site-packages (from minio) (2.2.1)\n",
"Requirement already satisfied: argon2-cffi in /opt/conda/lib/python3.11/site-packages (from minio) (23.1.0)\n",
"Requirement already satisfied: pycryptodome in /opt/conda/lib/python3.11/site-packages (from minio) (3.20.0)\n",
"Requirement already satisfied: typing-extensions in /opt/conda/lib/python3.11/site-packages (from minio) (4.11.0)\n",
"Requirement already satisfied: argon2-cffi-bindings in /opt/conda/lib/python3.11/site-packages (from argon2-cffi->minio) (21.2.0)\n",
"Requirement already satisfied: cffi>=1.0.1 in /opt/conda/lib/python3.11/site-packages (from argon2-cffi-bindings->argon2-cffi->minio) (1.16.0)\n",
"Requirement already satisfied: pycparser in /opt/conda/lib/python3.11/site-packages (from cffi>=1.0.1->argon2-cffi-bindings->argon2-cffi->minio) (2.22)\n"
]
}
],
"source": [
"!pip install pvlib \n",
"!pip install lifewatch-pypam\n",
"!pip install lifewatch-pypam==0.3.2\n",
"!pip install minio"
]
},
Expand Down

0 comments on commit 05988ff

Please sign in to comment.