Merge pull request #345 from int-brain-lab/atlas_imports

Atlas imports
int-brain-lab · Oct 9, 2023 · eae118c · eae118c
2 parents 3a67d47 + 1cc982a
commit eae118c
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Showing 4 changed files with 22 additions and 1 deletion.
diff --git a/.github/workflows/build_docs.yml b/.github/workflows/build_docs.yml
@@ -36,10 +36,17 @@ jobs:
           repository: int-brain-lab/one
           path: ONE
 
+      - name: Checkout iblatlas
+        uses: actions/checkout@v3
+        with:
+          repository: int-brain-lab/iblatlas
+          path: iblatlas
+
       - name: Move ibllib and ONE up a directory
         run: |
           mv ibllib-repo ..
           mv ONE ..
+          mv iblatlas ..
 
       - name: Setup Python
         uses: actions/setup-python@v4

diff --git a/.github/workflows/deploy_docs.yml b/.github/workflows/deploy_docs.yml
@@ -36,10 +36,17 @@ jobs:
           repository: int-brain-lab/one
           path: ONE
 
+      - name: Checkout iblatlas
+        uses: actions/checkout@v3
+        with:
+          repository: int-brain-lab/iblatlas
+          path: iblatlas
+
       - name: Move ibllib and ONE up a directory
         run: |
           mv ibllib-repo ..
           mv ONE ..
+          mv iblatlas ..
 
       - name: Setup Python
         uses: actions/setup-python@v4

diff --git a/docs_gh_pages/010_api_reference.rst b/docs_gh_pages/010_api_reference.rst
@@ -20,3 +20,10 @@ API Reference
    :recursive:
 
    brainbox
+
+.. autosummary::
+   :toctree: _autosummary
+   :template: custom-module-template.rst
+   :recursive:
+
+   iblatlas
diff --git a/docs_gh_pages/make_script.py b/docs_gh_pages/make_script.py
@@ -14,7 +14,7 @@
 nb_path = root.joinpath('notebooks')
 nb_path_external = [# Path(root.parent.parent).joinpath('ibllib-repo', 'examples'),
                     Path(root.parent.parent).joinpath('ibllib-repo', 'examples', 'loading_data'),
-                    Path(root.parent.parent).joinpath('ibllib-repo', 'examples', 'atlas'),
+                    Path(root.parent.parent).joinpath('iblatlas', 'examples'),
                     Path(root.parent.parent).joinpath('ibllib-repo', 'examples', 'data_release'),
                     Path(root.parent.parent).joinpath('ibllib-repo', 'examples', 'exploring_data'),
                     Path(root.parent.parent).joinpath('ibllib-repo', 'brainbox', 'examples'),