Skip to content

Commit

Permalink
Update documentation
Browse files Browse the repository at this point in the history
  • Loading branch information
actions-user committed Feb 15, 2024
1 parent 81f6705 commit 53b5bf4
Show file tree
Hide file tree
Showing 38 changed files with 1,005 additions and 949 deletions.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified _images/notebooks_external_atlas_dorsal_cortex_flatmap_16_0.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified _images/notebooks_external_atlas_plotting_scalar_on_slice_19_0.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified _images/notebooks_external_atlas_swanson_flatmap_25_1.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified _images/notebooks_external_docs_wheel_moves_31_0.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified _images/notebooks_external_loading_trials_data_18_0.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
96 changes: 48 additions & 48 deletions notebooks_external/Working with ibllib atlas.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -30,10 +30,10 @@
"id": "df873343",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:43.134362Z",
"iopub.status.busy": "2024-02-15T15:23:43.134173Z",
"iopub.status.idle": "2024-02-15T15:23:44.684471Z",
"shell.execute_reply": "2024-02-15T15:23:44.683727Z"
"iopub.execute_input": "2024-02-15T19:32:27.515424Z",
"iopub.status.busy": "2024-02-15T19:32:27.514935Z",
"iopub.status.idle": "2024-02-15T19:32:29.088627Z",
"shell.execute_reply": "2024-02-15T19:32:29.087919Z"
}
},
"outputs": [],
Expand Down Expand Up @@ -75,10 +75,10 @@
"id": "769b4fd4",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:44.687873Z",
"iopub.status.busy": "2024-02-15T15:23:44.687460Z",
"iopub.status.idle": "2024-02-15T15:23:44.897000Z",
"shell.execute_reply": "2024-02-15T15:23:44.896273Z"
"iopub.execute_input": "2024-02-15T19:32:29.091993Z",
"iopub.status.busy": "2024-02-15T19:32:29.091507Z",
"iopub.status.idle": "2024-02-15T19:32:29.304374Z",
"shell.execute_reply": "2024-02-15T19:32:29.303746Z"
}
},
"outputs": [],
Expand Down Expand Up @@ -116,10 +116,10 @@
"id": "ff7cb654",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:44.899836Z",
"iopub.status.busy": "2024-02-15T15:23:44.899453Z",
"iopub.status.idle": "2024-02-15T15:23:45.074849Z",
"shell.execute_reply": "2024-02-15T15:23:45.074249Z"
"iopub.execute_input": "2024-02-15T19:32:29.307693Z",
"iopub.status.busy": "2024-02-15T19:32:29.307301Z",
"iopub.status.idle": "2024-02-15T19:32:29.486019Z",
"shell.execute_reply": "2024-02-15T19:32:29.485355Z"
}
},
"outputs": [],
Expand Down Expand Up @@ -169,10 +169,10 @@
"id": "9c2d097f",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:45.077405Z",
"iopub.status.busy": "2024-02-15T15:23:45.077048Z",
"iopub.status.idle": "2024-02-15T15:23:45.091443Z",
"shell.execute_reply": "2024-02-15T15:23:45.090871Z"
"iopub.execute_input": "2024-02-15T19:32:29.488757Z",
"iopub.status.busy": "2024-02-15T19:32:29.488352Z",
"iopub.status.idle": "2024-02-15T19:32:29.504068Z",
"shell.execute_reply": "2024-02-15T19:32:29.503417Z"
}
},
"outputs": [],
Expand All @@ -199,10 +199,10 @@
"id": "1d078160",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:45.093781Z",
"iopub.status.busy": "2024-02-15T15:23:45.093443Z",
"iopub.status.idle": "2024-02-15T15:23:45.097638Z",
"shell.execute_reply": "2024-02-15T15:23:45.097020Z"
"iopub.execute_input": "2024-02-15T19:32:29.506677Z",
"iopub.status.busy": "2024-02-15T19:32:29.506307Z",
"iopub.status.idle": "2024-02-15T19:32:29.510672Z",
"shell.execute_reply": "2024-02-15T19:32:29.510067Z"
}
},
"outputs": [],
Expand Down Expand Up @@ -232,10 +232,10 @@
"id": "0c1fdf7c",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:45.100004Z",
"iopub.status.busy": "2024-02-15T15:23:45.099668Z",
"iopub.status.idle": "2024-02-15T15:23:45.103104Z",
"shell.execute_reply": "2024-02-15T15:23:45.102410Z"
"iopub.execute_input": "2024-02-15T19:32:29.513107Z",
"iopub.status.busy": "2024-02-15T19:32:29.512746Z",
"iopub.status.idle": "2024-02-15T19:32:29.516229Z",
"shell.execute_reply": "2024-02-15T19:32:29.515620Z"
}
},
"outputs": [],
Expand All @@ -259,10 +259,10 @@
"id": "cf56d8d9",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:45.105575Z",
"iopub.status.busy": "2024-02-15T15:23:45.105206Z",
"iopub.status.idle": "2024-02-15T15:23:45.108873Z",
"shell.execute_reply": "2024-02-15T15:23:45.108263Z"
"iopub.execute_input": "2024-02-15T19:32:29.518657Z",
"iopub.status.busy": "2024-02-15T19:32:29.518308Z",
"iopub.status.idle": "2024-02-15T19:32:29.521872Z",
"shell.execute_reply": "2024-02-15T19:32:29.521237Z"
}
},
"outputs": [],
Expand All @@ -286,10 +286,10 @@
"id": "b607f170",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:45.111287Z",
"iopub.status.busy": "2024-02-15T15:23:45.110945Z",
"iopub.status.idle": "2024-02-15T15:23:45.487704Z",
"shell.execute_reply": "2024-02-15T15:23:45.486793Z"
"iopub.execute_input": "2024-02-15T19:32:29.524312Z",
"iopub.status.busy": "2024-02-15T19:32:29.523955Z",
"iopub.status.idle": "2024-02-15T19:32:29.905702Z",
"shell.execute_reply": "2024-02-15T19:32:29.904957Z"
}
},
"outputs": [],
Expand Down Expand Up @@ -321,10 +321,10 @@
"id": "31cceb95",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:45.490845Z",
"iopub.status.busy": "2024-02-15T15:23:45.490421Z",
"iopub.status.idle": "2024-02-15T15:23:45.494221Z",
"shell.execute_reply": "2024-02-15T15:23:45.493604Z"
"iopub.execute_input": "2024-02-15T19:32:29.908747Z",
"iopub.status.busy": "2024-02-15T19:32:29.908505Z",
"iopub.status.idle": "2024-02-15T19:32:29.912343Z",
"shell.execute_reply": "2024-02-15T19:32:29.911721Z"
}
},
"outputs": [],
Expand All @@ -346,10 +346,10 @@
"id": "97079539",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:45.496937Z",
"iopub.status.busy": "2024-02-15T15:23:45.496442Z",
"iopub.status.idle": "2024-02-15T15:23:45.500100Z",
"shell.execute_reply": "2024-02-15T15:23:45.499463Z"
"iopub.execute_input": "2024-02-15T19:32:29.914664Z",
"iopub.status.busy": "2024-02-15T19:32:29.914318Z",
"iopub.status.idle": "2024-02-15T19:32:29.917857Z",
"shell.execute_reply": "2024-02-15T19:32:29.917234Z"
}
},
"outputs": [],
Expand All @@ -371,10 +371,10 @@
"id": "4c93c1a0",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:45.502612Z",
"iopub.status.busy": "2024-02-15T15:23:45.502263Z",
"iopub.status.idle": "2024-02-15T15:23:45.513299Z",
"shell.execute_reply": "2024-02-15T15:23:45.512764Z"
"iopub.execute_input": "2024-02-15T19:32:29.920358Z",
"iopub.status.busy": "2024-02-15T19:32:29.919970Z",
"iopub.status.idle": "2024-02-15T19:32:29.930898Z",
"shell.execute_reply": "2024-02-15T19:32:29.930384Z"
}
},
"outputs": [],
Expand All @@ -396,10 +396,10 @@
"id": "0680ca09",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:45.515594Z",
"iopub.status.busy": "2024-02-15T15:23:45.515259Z",
"iopub.status.idle": "2024-02-15T15:23:45.895283Z",
"shell.execute_reply": "2024-02-15T15:23:45.894547Z"
"iopub.execute_input": "2024-02-15T19:32:29.933265Z",
"iopub.status.busy": "2024-02-15T19:32:29.932880Z",
"iopub.status.idle": "2024-02-15T19:32:30.317010Z",
"shell.execute_reply": "2024-02-15T19:32:30.316349Z"
}
},
"outputs": [],
Expand Down
2 changes: 1 addition & 1 deletion notebooks_external/atlas_circular_pyramidal_flatmap.html
Original file line number Diff line number Diff line change
Expand Up @@ -173,7 +173,7 @@ <h2>The circular flatmap<a class="headerlink" href="#The-circular-flatmap" title
</div>
<div class="output_area docutils container">
<div class="highlight"><pre>
[&lt;matplotlib.lines.Line2D at 0x7ffa317ea640&gt;]
[&lt;matplotlib.lines.Line2D at 0x7f63da395400&gt;]
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down
96 changes: 48 additions & 48 deletions notebooks_external/atlas_circular_pyramidal_flatmap.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -38,10 +38,10 @@
"id": "1178246b",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:27.680114Z",
"iopub.status.busy": "2024-02-15T15:23:27.679921Z",
"iopub.status.idle": "2024-02-15T15:23:30.220488Z",
"shell.execute_reply": "2024-02-15T15:23:30.219775Z"
"iopub.execute_input": "2024-02-15T19:32:11.277324Z",
"iopub.status.busy": "2024-02-15T19:32:11.277118Z",
"iopub.status.idle": "2024-02-15T19:32:13.942224Z",
"shell.execute_reply": "2024-02-15T19:32:13.941419Z"
}
},
"outputs": [],
Expand All @@ -56,10 +56,10 @@
"id": "490614c3",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:30.223438Z",
"iopub.status.busy": "2024-02-15T15:23:30.223159Z",
"iopub.status.idle": "2024-02-15T15:23:30.436771Z",
"shell.execute_reply": "2024-02-15T15:23:30.436088Z"
"iopub.execute_input": "2024-02-15T19:32:13.945284Z",
"iopub.status.busy": "2024-02-15T19:32:13.945027Z",
"iopub.status.idle": "2024-02-15T19:32:14.166974Z",
"shell.execute_reply": "2024-02-15T19:32:14.166254Z"
}
},
"outputs": [],
Expand All @@ -83,10 +83,10 @@
"id": "8b8c4223",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:30.439477Z",
"iopub.status.busy": "2024-02-15T15:23:30.439115Z",
"iopub.status.idle": "2024-02-15T15:23:30.754537Z",
"shell.execute_reply": "2024-02-15T15:23:30.753827Z"
"iopub.execute_input": "2024-02-15T19:32:14.169922Z",
"iopub.status.busy": "2024-02-15T19:32:14.169492Z",
"iopub.status.idle": "2024-02-15T19:32:14.491958Z",
"shell.execute_reply": "2024-02-15T19:32:14.491244Z"
}
},
"outputs": [],
Expand All @@ -110,10 +110,10 @@
"id": "7461e3f8",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:30.757321Z",
"iopub.status.busy": "2024-02-15T15:23:30.756781Z",
"iopub.status.idle": "2024-02-15T15:23:32.469310Z",
"shell.execute_reply": "2024-02-15T15:23:32.468729Z"
"iopub.execute_input": "2024-02-15T19:32:14.495501Z",
"iopub.status.busy": "2024-02-15T19:32:14.494995Z",
"iopub.status.idle": "2024-02-15T19:32:16.255980Z",
"shell.execute_reply": "2024-02-15T19:32:16.255230Z"
}
},
"outputs": [],
Expand All @@ -128,10 +128,10 @@
"id": "1f78b2ab",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:32.472405Z",
"iopub.status.busy": "2024-02-15T15:23:32.471939Z",
"iopub.status.idle": "2024-02-15T15:23:32.862804Z",
"shell.execute_reply": "2024-02-15T15:23:32.862130Z"
"iopub.execute_input": "2024-02-15T19:32:16.259136Z",
"iopub.status.busy": "2024-02-15T19:32:16.258724Z",
"iopub.status.idle": "2024-02-15T19:32:16.693580Z",
"shell.execute_reply": "2024-02-15T19:32:16.692891Z"
}
},
"outputs": [],
Expand Down Expand Up @@ -162,10 +162,10 @@
"id": "20a1db83",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:32.865917Z",
"iopub.status.busy": "2024-02-15T15:23:32.865706Z",
"iopub.status.idle": "2024-02-15T15:23:32.869246Z",
"shell.execute_reply": "2024-02-15T15:23:32.868717Z"
"iopub.execute_input": "2024-02-15T19:32:16.697132Z",
"iopub.status.busy": "2024-02-15T19:32:16.696683Z",
"iopub.status.idle": "2024-02-15T19:32:16.700277Z",
"shell.execute_reply": "2024-02-15T19:32:16.699628Z"
}
},
"outputs": [],
Expand All @@ -183,10 +183,10 @@
"id": "e6ae51d0",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:32.871568Z",
"iopub.status.busy": "2024-02-15T15:23:32.871191Z",
"iopub.status.idle": "2024-02-15T15:23:32.892782Z",
"shell.execute_reply": "2024-02-15T15:23:32.892291Z"
"iopub.execute_input": "2024-02-15T19:32:16.702875Z",
"iopub.status.busy": "2024-02-15T19:32:16.702480Z",
"iopub.status.idle": "2024-02-15T19:32:16.725373Z",
"shell.execute_reply": "2024-02-15T19:32:16.724779Z"
}
},
"outputs": [],
Expand All @@ -204,10 +204,10 @@
"id": "3724b968",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:32.895150Z",
"iopub.status.busy": "2024-02-15T15:23:32.894773Z",
"iopub.status.idle": "2024-02-15T15:23:32.898146Z",
"shell.execute_reply": "2024-02-15T15:23:32.897591Z"
"iopub.execute_input": "2024-02-15T19:32:16.728436Z",
"iopub.status.busy": "2024-02-15T19:32:16.728054Z",
"iopub.status.idle": "2024-02-15T19:32:16.732170Z",
"shell.execute_reply": "2024-02-15T19:32:16.731519Z"
}
},
"outputs": [],
Expand All @@ -232,10 +232,10 @@
"id": "dfa2d623",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:32.900535Z",
"iopub.status.busy": "2024-02-15T15:23:32.900162Z",
"iopub.status.idle": "2024-02-15T15:23:33.477074Z",
"shell.execute_reply": "2024-02-15T15:23:33.476384Z"
"iopub.execute_input": "2024-02-15T19:32:16.734639Z",
"iopub.status.busy": "2024-02-15T19:32:16.734412Z",
"iopub.status.idle": "2024-02-15T19:32:17.354942Z",
"shell.execute_reply": "2024-02-15T19:32:17.354292Z"
}
},
"outputs": [],
Expand All @@ -252,10 +252,10 @@
"id": "cc78a1c7",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:33.480892Z",
"iopub.status.busy": "2024-02-15T15:23:33.480400Z",
"iopub.status.idle": "2024-02-15T15:23:33.856308Z",
"shell.execute_reply": "2024-02-15T15:23:33.855624Z"
"iopub.execute_input": "2024-02-15T19:32:17.358553Z",
"iopub.status.busy": "2024-02-15T19:32:17.358187Z",
"iopub.status.idle": "2024-02-15T19:32:17.738492Z",
"shell.execute_reply": "2024-02-15T19:32:17.737799Z"
}
},
"outputs": [],
Expand All @@ -272,10 +272,10 @@
"id": "37bf7bd8",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:33.858984Z",
"iopub.status.busy": "2024-02-15T15:23:33.858565Z",
"iopub.status.idle": "2024-02-15T15:23:34.186462Z",
"shell.execute_reply": "2024-02-15T15:23:34.185773Z"
"iopub.execute_input": "2024-02-15T19:32:17.741311Z",
"iopub.status.busy": "2024-02-15T19:32:17.740924Z",
"iopub.status.idle": "2024-02-15T19:32:18.107505Z",
"shell.execute_reply": "2024-02-15T19:32:18.106760Z"
}
},
"outputs": [],
Expand All @@ -292,10 +292,10 @@
"id": "28f7f30c",
"metadata": {
"execution": {
"iopub.execute_input": "2024-02-15T15:23:34.189136Z",
"iopub.status.busy": "2024-02-15T15:23:34.188931Z",
"iopub.status.idle": "2024-02-15T15:23:34.704290Z",
"shell.execute_reply": "2024-02-15T15:23:34.703588Z"
"iopub.execute_input": "2024-02-15T19:32:18.110243Z",
"iopub.status.busy": "2024-02-15T19:32:18.109826Z",
"iopub.status.idle": "2024-02-15T19:32:18.663107Z",
"shell.execute_reply": "2024-02-15T19:32:18.662429Z"
}
},
"outputs": [],
Expand Down
Loading

0 comments on commit 53b5bf4

Please sign in to comment.