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Organize tests
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@edelarua
edelarua committed Jul 21, 2023
1 parent 62c7990 commit 87b738a
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214 changes: 0 additions & 214 deletions tests/testthat/_snaps/analyze_variables.md
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# control_analyze_vars works with customized parameters

Code
res
Output
$conf_level
[1] 0.9
$quantiles
[1] 0.1 0.9
$quantile_type
[1] 2
$test_mean
[1] 0

# summary_formats works as expected

Code
res
Output
n sum mean
"xx." "xx.x" "xx.x"
sd se mean_sd
"xx.x" "xx.x" "xx.x (xx.x)"
mean_se mean_ci mean_sei
"xx.x (xx.x)" "(xx.xx, xx.xx)" "(xx.xx, xx.xx)"
mean_sdi mean_pval median
"(xx.xx, xx.xx)" "xx.xx" "xx.x"
mad median_ci quantiles
"xx.x" "(xx.xx, xx.xx)" "xx.x - xx.x"
iqr range min
"xx.x" "xx.x - xx.x" "xx.x"
max median_range cv
"xx.x" "xx.x (xx.x - xx.x)" "xx.x"
geom_mean geom_mean_ci geom_cv
"xx.x" "(xx.xx, xx.xx)" "xx.x"

---

Code
res
Output
$n
[1] "xx."
$count
[1] "xx."
$count_fraction
function(x, ...) {
attr(x, "label") <- NULL
if (any(is.na(x))) {
return("NA")
}
checkmate::assert_vector(x)
checkmate::assert_integerish(x[1])
assert_proportion_value(x[2], include_boundaries = TRUE)
result <- if (x[1] == 0) {
"0"
} else {
paste0(x[1], " (", round(x[2] * 100, 1), "%)")
}
return(result)
}
<environment: namespace:tern>
$n_blq
[1] "xx."
$pval
[1] "x.xxxx | (<0.0001)"

# summary_labels works as expected

Code
res
Output
n sum
"n" "Sum"
mean sd
"Mean" "SD"
se mean_sd
"SE" "Mean (SD)"
mean_se mean_ci
"Mean (SE)" "Mean 95% CI"
mean_sei mean_sdi
"Mean -/+ 1xSE" "Mean -/+ 1xSD"
mean_pval median
"Mean p-value (H0: mean = 0)" "Median"
mad median_ci
"Median Absolute Deviation" "Median 95% CI"
quantiles iqr
"25% and 75%-ile" "IQR"
range min
"Min - Max" "Minimum"
max median_range
"Maximum" "Median (Min - Max)"
cv geom_mean
"CV (%)" "Geometric Mean"
geom_mean_ci geom_cv
"Geometric Mean 95% CI" "CV % Geometric Mean"

---

Code
res
Output
n count
"n" "count"
count_fraction n_blq
"count_fraction" "n_blq"
pval
"p-value (chi-squared test)"

# summary_custom works as expected

Code
res
Output
$stats
[1] "n" "sum" "mean" "sd" "se"
[6] "mean_sd" "mean_se" "mean_ci" "mean_sei" "mean_sdi"
[11] "mean_pval" "median" "mad" "median_ci" "quantiles"
[16] "iqr" "range" "min" "max" "median_range"
[21] "cv" "geom_mean" "geom_mean_ci" "geom_cv"
$formats
n sum mean
"xx." "xx.x" "xx.x"
sd se mean_sd
"xx.x" "xx.x" "xx.x (xx.x)"
mean_se mean_ci mean_sei
"xx.x (xx.x)" "(xx.xx, xx.xx)" "(xx.xx, xx.xx)"
mean_sdi mean_pval median
"(xx.xx, xx.xx)" "xx.xx" "xx.x"
mad median_ci quantiles
"xx.x" "(xx.xx, xx.xx)" "xx.x - xx.x"
iqr range min
"xx.x" "xx.x - xx.x" "xx.x"
max median_range cv
"xx.x" "xx.x (xx.x - xx.x)" "xx.x"
geom_mean geom_mean_ci geom_cv
"xx.x" "(xx.xx, xx.xx)" "xx.x"
$labels
n sum
"n" "Sum"
mean sd
"Mean" "SD"
se mean_sd
"SE" "Mean (SD)"
mean_se mean_ci
"Mean (SE)" "Mean 95% CI"
mean_sei mean_sdi
"Mean -/+ 1xSE" "Mean -/+ 1xSD"
mean_pval median
"Mean p-value (H0: mean = 0)" "Median"
mad median_ci
"Median Absolute Deviation" "Median 95% CI"
quantiles iqr
"25% and 75%-ile" "IQR"
range min
"Min - Max" "Minimum"
max median_range
"Maximum" "Median (Min - Max)"
cv geom_mean
"CV (%)" "Geometric Mean"
geom_mean_ci geom_cv
"Geometric Mean 95% CI" "CV % Geometric Mean"
$indent_mods
n sum mean sd se mean_sd
0 0 0 0 0 0
mean_se mean_ci mean_sei mean_sdi mean_pval median
0 0 0 0 0 0
mad median_ci quantiles iqr range min
0 0 0 0 0 0
max median_range cv geom_mean geom_mean_ci geom_cv
0 0 0 0 0 0

---

Code
res
Output
$stats
[1] "n" "count"
$formats
$formats$n
[1] "xx.xx"
$formats$count
[1] "xx."
$labels
n count
"n" "#"
$indent_mods
n count
2 2

# s_summary return NA for x length 0L

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