register teal.logger handlers

.pre-commit-config.yaml

@@ -28,7 +28,6 @@ repos:
           - formatters
           - ggplot2
           - lifecycle
-          - logger
           - shinyvalidate
           - insightsengineering/teal.code
           - insightsengineering/teal.logger

DESCRIPTION

@@ -31,16 +31,16 @@ Imports:
     formatters (>= 0.3.1),
     ggplot2,
     lifecycle,
-    logger (>= 0.2.0),
     shinyvalidate,
     teal.code (>= 0.4.1.9009),
-    teal.logger (>= 0.1.1),
+    teal.logger (>= 0.1.3.9010),
     teal.reporter (>= 0.2.0),
     teal.widgets (>= 0.4.0),
     tern (>= 0.7.10),
     tidyr
 Suggests:
     knitr,
+    logger (>= 0.2.0),
     nestcolor (>= 0.1.0),
     rmarkdown,
     teal.data (>= 0.3.0.9018),

R/tm_g_ae_oview.R

@@ -80,7 +80,7 @@ tm_g_ae_oview <- function(label,
                           fontsize = c(5, 3, 7),
                           plot_height = c(600L, 200L, 2000L),
                           plot_width = NULL) {
-  logger::log_info("Initializing tm_g_ae_oview")
+  message("Initializing tm_g_ae_oview")
   checkmate::assert_class(arm_var, classes = "choices_selected")
   checkmate::assert_class(flag_var_anl, classes = "choices_selected")
   checkmate::assert(

R/tm_g_ae_sub.R

@@ -56,7 +56,7 @@ tm_g_ae_sub <- function(label,
                         plot_height = c(600L, 200L, 2000L),
                         plot_width = NULL,
                         fontsize = c(5, 3, 7)) {
-  logger::log_info("Initializing tm_g_ae_sub")
+  message("Initializing tm_g_ae_sub")
   checkmate::assert_class(arm_var, classes = "choices_selected")
   checkmate::assert_class(group_var, classes = "choices_selected")
   checkmate::assert(

R/tm_g_butterfly.R

@@ -121,7 +121,7 @@ tm_g_butterfly <- function(label,
                            plot_width = NULL,
                            pre_output = NULL,
                            post_output = NULL) {
-  logger::log_info("Initializing tm_g_butterfly")
+  message("Initializing tm_g_butterfly")
   checkmate::assert_string(label)
   checkmate::assert_string(dataname)
   checkmate::assert_class(filter_var, classes = "choices_selected", null.ok = TRUE)

R/tm_g_events_term_id.R

@@ -60,7 +60,7 @@ tm_g_events_term_id <- function(label,
                                 fontsize = c(5, 3, 7),
                                 plot_height = c(600L, 200L, 2000L),
                                 plot_width = NULL) {
-  logger::log_info("Initializing tm_g_events_term_id")
+  message("Initializing tm_g_events_term_id")
   checkmate::assert_string(label)
   checkmate::assert_class(term_var, classes = "choices_selected")
   checkmate::assert_class(arm_var, classes = "choices_selected")

R/tm_g_heat_bygrade.R

@@ -132,7 +132,7 @@ tm_g_heat_bygrade <- function(label,
                               fontsize = c(5, 3, 7),
                               plot_height = c(600L, 200L, 2000L),
                               plot_width = NULL) {
-  logger::log_info("Initializing tm_g_heat_bygrade")
+  message("Initializing tm_g_heat_bygrade")
   args <- as.list(environment())
 
   checkmate::assert_string(label)

R/tm_g_spiderplot.R

@@ -96,7 +96,7 @@ tm_g_spiderplot <- function(label,
                             plot_width = NULL,
                             pre_output = NULL,
                             post_output = NULL) {
-  logger::log_info("Initializing tm_g_spiderplot")
+  message("Initializing tm_g_spiderplot")
   checkmate::assert_class(paramcd, classes = "choices_selected")
   checkmate::assert_class(x_var, classes = "choices_selected")
   checkmate::assert_class(y_var, classes = "choices_selected")

R/tm_g_swimlane.R

@@ -122,7 +122,7 @@ tm_g_swimlane <- function(label,
                           pre_output = NULL,
                           post_output = NULL,
                           x_label = "Time from First Treatment (Day)") {
-  logger::log_info("Initializing tm_g_swimlane")
+  message("Initializing tm_g_swimlane")
   args <- as.list(environment())
 
   checkmate::assert_string(label)

R/tm_g_waterfall.R

@@ -105,7 +105,7 @@ tm_g_waterfall <- function(label,
                            plot_width = NULL,
                            pre_output = NULL,
                            post_output = NULL) {
-  logger::log_info("Initializing tm_g_waterfall")
+  message("Initializing tm_g_waterfall")
   checkmate::assert_string(label)
   checkmate::assert_string(dataname_tr)
   checkmate::assert_string(dataname_rs)

R/zzz.R

@@ -1,3 +1,4 @@
 .onLoad <- function(libname, pkgname) { # nolint
   teal.logger::register_logger(namespace = "teal.osprey")
+  teal.logger::register_handlers("teal.osprey")
 }