Merge branch 'main' into register_handlers

insightsengineering · Mar 20, 2024 · d53c25a · d53c25a
2 parents 45bbc0b + cfdc314
commit d53c25a
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: teal.osprey
 Title: 'teal' Modules for TLG Functions in Osprey
-Version: 0.1.16.9013
-Date: 2024-03-14
+Version: 0.1.16.9014
+Date: 2024-03-15
 Authors@R: c(
     person("Nina", "Qi", , "[email protected]", role = c("aut", "cre")),
     person("Dawid", "Kaledkowski", , "[email protected]", role = "aut"),

diff --git a/NEWS.md b/NEWS.md
@@ -1,4 +1,4 @@
-# teal.osprey 0.1.16.9013
+# teal.osprey 0.1.16.9014
 
 ### Breaking Changes
 * Adapted all modules to use `teal_data` objects.

diff --git a/R/tm_g_ae_oview.R b/R/tm_g_ae_oview.R
@@ -127,7 +127,7 @@ ui_g_ae_oview <- function(id, ...) {
     output = teal.widgets::white_small_well(
       plot_decorate_output(id = ns(NULL))
     ),
-    encoding = div(
+    encoding = tags$div(
       ### Reporter
       teal.reporter::simple_reporter_ui(ns("simple_reporter")),
       ###

diff --git a/R/tm_g_ae_sub.R b/R/tm_g_ae_sub.R
@@ -102,7 +102,7 @@ ui_g_ae_sub <- function(id, ...) {
     output = teal.widgets::white_small_well(
       plot_decorate_output(id = ns(NULL))
     ),
-    encoding = div(
+    encoding = tags$div(
       ### Reporter
       teal.reporter::simple_reporter_ui(ns("simple_reporter")),
       ###

diff --git a/R/tm_g_butterfly.R b/R/tm_g_butterfly.R
@@ -164,7 +164,7 @@ ui_g_butterfly <- function(id, ...) {
     output = teal.widgets::white_small_well(
       teal.widgets::plot_with_settings_ui(id = ns("butterflyplot"))
     ),
-    encoding = div(
+    encoding = tags$div(
       ### Reporter
       teal.reporter::simple_reporter_ui(ns("simple_reporter")),
       ###

diff --git a/R/tm_g_events_term_id.R b/R/tm_g_events_term_id.R
@@ -103,7 +103,7 @@ ui_g_events_term_id <- function(id, ...) {
     output = teal.widgets::white_small_well(
       plot_decorate_output(id = ns(NULL))
     ),
-    encoding = div(
+    encoding = tags$div(
       ### Reporter
       teal.reporter::simple_reporter_ui(ns("simple_reporter")),
       ###

diff --git a/R/tm_g_heat_bygrade.R b/R/tm_g_heat_bygrade.R
@@ -194,7 +194,7 @@ ui_g_heatmap_bygrade <- function(id, ...) {
       output = teal.widgets::white_small_well(
         plot_decorate_output(id = ns(NULL))
       ),
-      encoding = div(
+      encoding = tags$div(
         ### Reporter
         teal.reporter::simple_reporter_ui(ns("simple_reporter")),
         ###
@@ -234,7 +234,7 @@ ui_g_heatmap_bygrade <- function(id, ...) {
           multiple = FALSE
         ),
         helpText("Plot conmed"),
-        div(
+        tags$div(
           class = "pretty-left-border",
           if (!is.na(args$cm_dataname)) {
             checkboxInput(

diff --git a/R/tm_g_patient_profile.R b/R/tm_g_patient_profile.R
@@ -217,7 +217,7 @@ ui_g_patient_profile <- function(id, ...) {
       output = teal.widgets::white_small_well(
         teal.widgets::plot_with_settings_ui(id = ns("patientprofileplot"))
       ),
-      encoding = div(
+      encoding = tags$div(
         ### Reporter
         teal.reporter::simple_reporter_ui(ns("simple_reporter")),
         ###
@@ -228,7 +228,7 @@ ui_g_patient_profile <- function(id, ...) {
           choices = a$patient_id$choices,
           selected = a$patient_id$selected
         ),
-        div(
+        tags$div(
           tagList(
             helpText("Select", tags$code("ADaM"), "Domains"),
             checkboxGroupInput(
@@ -320,7 +320,7 @@ ui_g_patient_profile <- function(id, ...) {
         ),
         textInput(
           ns("x_limit"),
-          label = div(
+          label = tags$div(
             "Study Days Range",
             tags$br(),
             helpText("Enter TWO numeric values of study days range, separated by comma (eg. -28, 750)")

diff --git a/R/tm_g_spiderplot.R b/R/tm_g_spiderplot.R
@@ -140,13 +140,13 @@ ui_g_spider <- function(id, ...) {
       output = teal.widgets::white_small_well(
         teal.widgets::plot_with_settings_ui(id = ns("spiderplot"))
       ),
-      encoding = div(
+      encoding = tags$div(
         ### Reporter
         teal.reporter::simple_reporter_ui(ns("simple_reporter")),
         ###
         tags$label("Encodings", class = "text-primary"),
         helpText("Analysis data:", tags$code(a$dataname)),
-        div(
+        tags$div(
           class = "pretty-left-border",
           teal.widgets::optionalSelectInput(
             ns("paramcd"),
@@ -210,7 +210,7 @@ ui_g_spider <- function(id, ...) {
         ),
         textInput(
           ns("vref_line"),
-          label = div(
+          label = tags$div(
             "Vertical Reference Line(s)",
             tags$br(),
             helpText("Enter numeric value(s) of vertical reference lines, separated by comma (eg. -2, 1)")
@@ -219,7 +219,7 @@ ui_g_spider <- function(id, ...) {
         ),
         textInput(
           ns("href_line"),
-          label = div(
+          label = tags$div(
             "Hortizontal Reference Line(s)",
             tags$br(),
             helpText("Enter numeric value(s) of horizontal reference lines, separated by comma (eg. -2, 1)")

diff --git a/R/tm_g_swimlane.R b/R/tm_g_swimlane.R
@@ -180,29 +180,29 @@ ui_g_swimlane <- function(id, ...) {
       output = teal.widgets::white_small_well(
         teal.widgets::plot_with_settings_ui(id = ns("swimlaneplot"))
       ),
-      encoding = div(
+      encoding = tags$div(
         ### Reporter
         teal.reporter::simple_reporter_ui(ns("simple_reporter")),
         ###
         tags$label("Encodings", class = "text-primary"),
-        helpText("Analysis data:", code(a$dataname)),
-        div(
+        helpText("Analysis data:", tags$code(a$dataname)),
+        tags$div(
           class = "pretty-left-border",
           teal.widgets::optionalSelectInput(
             ns("bar_var"),
             "Bar Length",
             choices = a$bar_var$choices,
             selected = a$bar_var$selected,
             multiple = FALSE,
-            label_help = helpText("from ", code("ADSL"))
+            label_help = helpText("from ", tags$code("ADSL"))
           ),
           teal.widgets::optionalSelectInput(
             ns("bar_color_var"),
             "Bar Color",
             choices = a$bar_color_var$choices,
             selected = a$bar_color_var$selected,
             multiple = FALSE,
-            label_help = helpText("from ", code("ADSL"))
+            label_help = helpText("from ", tags$code("ADSL"))
           )
         ),
         teal.widgets::optionalSelectInput(
@@ -211,9 +211,9 @@ ui_g_swimlane <- function(id, ...) {
           choices = a$sort_var$choices,
           selected = a$sort_var$selected,
           multiple = FALSE,
-          label_help = helpText("from ", code("ADSL"))
+          label_help = helpText("from ", tags$code("ADSL"))
         ),
-        div(
+        tags$div(
           class = "pretty-left-border",
           if (a$dataname == "ADSL") {
             NULL
@@ -226,7 +226,7 @@ ui_g_swimlane <- function(id, ...) {
               choices = a$marker_pos_var$choices,
               selected = a$marker_pos_var$selected,
               multiple = FALSE,
-              label_help = helpText("from ", code(a$dataname))
+              label_help = helpText("from ", tags$code(a$dataname))
             )
           },
           uiOutput(ns("marker_shape_sel")),
@@ -238,11 +238,11 @@ ui_g_swimlane <- function(id, ...) {
           choices = a$anno_txt_var$choices,
           selected = a$anno_txt_var$selected,
           multiple = TRUE,
-          label_help = helpText("from ", code("ADSL"))
+          label_help = helpText("from ", tags$code("ADSL"))
         ),
         textInput(
           ns("vref_line"),
-          label = div(
+          label = tags$div(
             "Vertical Reference Line(s)",
             tags$br(),
             helpText("Enter numeric value(s) of reference lines, separated by comma (eg. 100, 200)")
@@ -303,7 +303,7 @@ srv_g_swimlane <- function(id,
           ns("marker_shape_var"), "Marker Shape",
           choices = marker_shape_var$choices,
           selected = marker_shape_var$selected, multiple = FALSE,
-          label_help = helpText("from ", code(dataname))
+          label_help = helpText("from ", tags$code(dataname))
         )
       }
     })
@@ -316,7 +316,7 @@ srv_g_swimlane <- function(id,
           ns("marker_color_var"), "Marker Color",
           choices = marker_color_var$choices,
           selected = marker_color_var$selected, multiple = FALSE,
-          label_help = helpText("from ", code(dataname))
+          label_help = helpText("from ", tags$code(dataname))
         )
       }
     })

diff --git a/R/tm_g_waterfall.R b/R/tm_g_waterfall.R
@@ -156,7 +156,7 @@ ui_g_waterfall <- function(id, ...) {
     output = teal.widgets::white_small_well(
       teal.widgets::plot_with_settings_ui(id = ns("waterfallplot"))
     ),
-    encoding = div(
+    encoding = tags$div(
       ### Reporter
       teal.reporter::simple_reporter_ui(ns("simple_reporter")),
       ###
@@ -237,7 +237,7 @@ ui_g_waterfall <- function(id, ...) {
       ),
       textInput(
         ns("href_line"),
-        label = div(
+        label = tags$div(
           "Horizontal Reference Line(s)",
           tags$br(),
           helpText("Enter numeric value(s) of reference lines, separated by comma (eg. -10, 20)")
@@ -246,7 +246,7 @@ ui_g_waterfall <- function(id, ...) {
       ),
       textInput(
         ns("ytick_at"),
-        label = div(
+        label = tags$div(
           "Y-axis Interval",
           tags$br(),
           helpText("Enter a numeric value of Y axis interval")
@@ -255,7 +255,7 @@ ui_g_waterfall <- function(id, ...) {
       ),
       textInput(
         ns("gap_point_val"),
-        label = div(
+        label = tags$div(
           "Break High Bars",
           tags$br(),
           helpText("Enter a numeric value to break very high bars")