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[skip deploy] Update renv.lock file for RNA-seq app
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github-actions[bot] committed Feb 12, 2025
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8 changes: 4 additions & 4 deletions RNA-seq/renv.lock
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},
"tern": {
"Package": "tern",
"Version": "0.9.7.9003",
"Version": "0.9.7.9004",
"Source": "GitHub",
"Title": "Create Common TLGs Used in Clinical Trials",
"Date": "2025-01-31",
"Date": "2025-02-11",
"Authors@R": "c( person(\"Joe\", \"Zhu\", , \"[email protected]\", role = c(\"aut\", \"cre\")), person(\"Daniel\", \"Sabanés Bové\", , \"[email protected]\", role = \"aut\"), person(\"Jana\", \"Stoilova\", , \"[email protected]\", role = \"aut\"), person(\"Davide\", \"Garolini\", , \"[email protected]\", role = \"aut\"), person(\"Emily\", \"de la Rua\", , \"[email protected]\", role = \"aut\"), person(\"Abinaya\", \"Yogasekaram\", , \"[email protected]\", role = \"aut\"), person(\"Heng\", \"Wang\", , \"[email protected]\", role = \"aut\"), person(\"Francois\", \"Collin\", role = \"aut\"), person(\"Adrian\", \"Waddell\", , \"[email protected]\", role = \"aut\"), person(\"Pawel\", \"Rucki\", , \"[email protected]\", role = \"aut\"), person(\"Chendi\", \"Liao\", , \"[email protected]\", role = \"aut\"), person(\"Jennifer\", \"Li\", , \"[email protected]\", role = \"aut\"), person(\"F. Hoffmann-La Roche AG\", role = c(\"cph\", \"fnd\")) )",
"Description": "Table, Listings, and Graphs (TLG) library for common outputs used in clinical trials.",
"License": "Apache License 2.0",
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"LazyData": "true",
"Roxygen": "list(markdown = TRUE)",
"RoxygenNote": "7.3.2",
"Collate": "'formatting_functions.R' 'abnormal.R' 'abnormal_by_baseline.R' 'abnormal_by_marked.R' 'abnormal_by_worst_grade.R' 'abnormal_by_worst_grade_worsen.R' 'analyze_colvars_functions.R' 'analyze_functions.R' 'analyze_variables.R' 'analyze_vars_in_cols.R' 'argument_convention.R' 'bland_altman.R' 'combination_function.R' 'compare_variables.R' 'control_incidence_rate.R' 'control_logistic.R' 'control_step.R' 'control_survival.R' 'count_cumulative.R' 'count_missed_doses.R' 'count_occurrences.R' 'count_occurrences_by_grade.R' 'count_patients_events_in_cols.R' 'count_patients_with_event.R' 'count_patients_with_flags.R' 'count_values.R' 'cox_regression.R' 'cox_regression_inter.R' 'coxph.R' 'd_pkparam.R' 'data.R' 'decorate_grob.R' 'desctools_binom_diff.R' 'df_explicit_na.R' 'estimate_multinomial_rsp.R' 'estimate_proportion.R' 'fit_rsp_step.R' 'fit_survival_step.R' 'g_forest.R' 'g_ipp.R' 'g_km.R' 'g_lineplot.R' 'g_step.R' 'g_waterfall.R' 'h_adsl_adlb_merge_using_worst_flag.R' 'h_biomarkers_subgroups.R' 'h_cox_regression.R' 'h_incidence_rate.R' 'h_km.R' 'h_logistic_regression.R' 'h_map_for_count_abnormal.R' 'h_pkparam_sort.R' 'h_response_biomarkers_subgroups.R' 'h_response_subgroups.R' 'h_stack_by_baskets.R' 'h_step.R' 'h_survival_biomarkers_subgroups.R' 'h_survival_duration_subgroups.R' 'imputation_rule.R' 'incidence_rate.R' 'logistic_regression.R' 'missing_data.R' 'odds_ratio.R' 'package.R' 'prop_diff.R' 'prop_diff_test.R' 'prune_occurrences.R' 'response_biomarkers_subgroups.R' 'response_subgroups.R' 'riskdiff.R' 'rtables_access.R' 'score_occurrences.R' 'split_cols_by_groups.R' 'stat.R' 'summarize_ancova.R' 'summarize_change.R' 'summarize_colvars.R' 'summarize_coxreg.R' 'summarize_functions.R' 'summarize_glm_count.R' 'summarize_num_patients.R' 'summarize_patients_exposure_in_cols.R' 'survival_biomarkers_subgroups.R' 'survival_coxph_pairwise.R' 'survival_duration_subgroups.R' 'survival_time.R' 'survival_timepoint.R' 'utils.R' 'utils_checkmate.R' 'utils_default_stats_formats_labels.R' 'utils_factor.R' 'utils_ggplot.R' 'utils_grid.R' 'utils_rtables.R' 'utils_split_funs.R'",
"Collate": "'formatting_functions.R' 'abnormal.R' 'abnormal_by_baseline.R' 'abnormal_by_marked.R' 'abnormal_by_worst_grade.R' 'abnormal_lab_worsen_by_baseline.R' 'analyze_colvars_functions.R' 'analyze_functions.R' 'analyze_variables.R' 'analyze_vars_in_cols.R' 'argument_convention.R' 'bland_altman.R' 'combination_function.R' 'compare_variables.R' 'control_incidence_rate.R' 'control_logistic.R' 'control_step.R' 'control_survival.R' 'count_cumulative.R' 'count_missed_doses.R' 'count_occurrences.R' 'count_occurrences_by_grade.R' 'count_patients_events_in_cols.R' 'count_patients_with_event.R' 'count_patients_with_flags.R' 'count_values.R' 'cox_regression.R' 'cox_regression_inter.R' 'coxph.R' 'd_pkparam.R' 'data.R' 'decorate_grob.R' 'desctools_binom_diff.R' 'df_explicit_na.R' 'estimate_multinomial_rsp.R' 'estimate_proportion.R' 'fit_rsp_step.R' 'fit_survival_step.R' 'g_forest.R' 'g_ipp.R' 'g_km.R' 'g_lineplot.R' 'g_step.R' 'g_waterfall.R' 'h_adsl_adlb_merge_using_worst_flag.R' 'h_biomarkers_subgroups.R' 'h_cox_regression.R' 'h_incidence_rate.R' 'h_km.R' 'h_logistic_regression.R' 'h_map_for_count_abnormal.R' 'h_pkparam_sort.R' 'h_response_biomarkers_subgroups.R' 'h_response_subgroups.R' 'h_stack_by_baskets.R' 'h_step.R' 'h_survival_biomarkers_subgroups.R' 'h_survival_duration_subgroups.R' 'imputation_rule.R' 'incidence_rate.R' 'logistic_regression.R' 'missing_data.R' 'odds_ratio.R' 'package.R' 'prop_diff.R' 'prop_diff_test.R' 'prune_occurrences.R' 'response_biomarkers_subgroups.R' 'response_subgroups.R' 'riskdiff.R' 'rtables_access.R' 'score_occurrences.R' 'split_cols_by_groups.R' 'stat.R' 'summarize_ancova.R' 'summarize_change.R' 'summarize_colvars.R' 'summarize_coxreg.R' 'summarize_functions.R' 'summarize_glm_count.R' 'summarize_num_patients.R' 'summarize_patients_exposure_in_cols.R' 'survival_biomarkers_subgroups.R' 'survival_coxph_pairwise.R' 'survival_duration_subgroups.R' 'survival_time.R' 'survival_timepoint.R' 'utils.R' 'utils_checkmate.R' 'utils_default_stats_formats_labels.R' 'utils_factor.R' 'utils_ggplot.R' 'utils_grid.R' 'utils_rtables.R' 'utils_split_funs.R'",
"Author": "Joe Zhu [aut, cre], Daniel Sabanés Bové [aut], Jana Stoilova [aut], Davide Garolini [aut], Emily de la Rua [aut], Abinaya Yogasekaram [aut], Heng Wang [aut], Francois Collin [aut], Adrian Waddell [aut], Pawel Rucki [aut], Chendi Liao [aut], Jennifer Li [aut], F. Hoffmann-La Roche AG [cph, fnd]",
"Maintainer": "Joe Zhu <[email protected]>",
"RemoteType": "github",
"RemoteHost": "api.github.com",
"RemoteUsername": "insightsengineering",
"RemoteRepo": "tern",
"RemoteRef": "main",
"RemoteSha": "4a23ed010c9092bccf4f7d79193fca7b13a4a58a"
"RemoteSha": "ed0945d09dc5c22d64d9e2dac67b7f156412ebe7"
},
"textshaping": {
"Package": "textshaping",
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