Update packages in build-check-install workflow + run `staged.depen…

…dencies` conditionally (#222) Signed-off-by: walkowif <[email protected]> Co-authored-by: cicdguy <[email protected]>
insightsengineering · Apr 9, 2024 · c33dd4c · c33dd4c
1 parent bff2101
commit c33dd4c
Showing 1 changed file with 24 additions and 1 deletion.
diff --git a/.github/workflows/build-check-install.yaml b/.github/workflows/build-check-install.yaml
@@ -174,6 +174,18 @@ on:
         required: false
         type: string
         default: ""
+      enable-sd:
+        description: |
+          Whether the installation of package dependencies via staged.dependencies should be enabled.
+        required: false
+        type: boolean
+        default: true
+      update-r-packages:
+        description: |
+          Whether R packages installed in the container should be updated to their latest version from CRAN/BioC.
+        required: false
+        type: boolean
+        default: false
 
 concurrency:
   group: r-cmd-${{ inputs.concurrency-group }}-${{ github.event.pull_request.number || github.ref }}
@@ -296,11 +308,13 @@ jobs:
           junit_xml_comparison_input="${{ inputs.junit-xml-comparison }}"
           junit_xml_positive_threshold="${{ inputs.junit-xml-positive-threshold }}"
           junit_xml_negative_threshold="${{ inputs.junit-xml-negative-threshold }}"
+          enable_sd="${{ inputs.enable-sd }}"
           echo "junit_xml_storage=${junit_xml_storage_input:-_junit_xml_reports}" >> $GITHUB_ENV
           echo "junit_xml_diff_branch=${junit_xml_diff_branch_input:-main}" >> $GITHUB_ENV
           echo "junit_xml_comparison=${junit_xml_comparison_input:-true}" >> $GITHUB_ENV
           echo "junit_xml_positive_threshold=${junit_xml_positive_threshold:-1.0}" >> $GITHUB_ENV
           echo "junit_xml_negative_threshold=${junit_xml_negative_threshold:-1.0}" >> $GITHUB_ENV
+          echo "enable_sd=${enable_sd:-true}" >> $GITHUB_ENV
         shell: bash
 
       - name: Restore npm cache 💰
@@ -338,8 +352,17 @@ jobs:
           key: sd-${{ runner.os }}-${{ github.event.repository.name }}
           path: ~/.staged.dependencies
 
+      - name: Update R packages 🗓️
+        if: >-
+          inputs.update-r-packages == true
+        run: |
+          update.packages()
+        shell: Rscript {0}
+
       - name: Run Staged dependencies 🎦
-        if: inputs.install-deps-from-package-repositories == ''
+        if: >-
+          env.enable_sd == 'true'
+            && inputs.install-deps-from-package-repositories == ''
         uses: insightsengineering/staged-dependencies-action@v1
         env:
           GITHUB_PAT: ${{ steps.github-token.outputs.token }}