Initialize revdepcheck action #1173
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| --- | |
| name: Coverage 📔 | |
| on: | |
| push: | |
| tags: | |
| - "v*" | |
| branches: | |
| - main | |
| pull_request: | |
| types: | |
| - opened | |
| - synchronize | |
| - reopened | |
| - ready_for_review | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| workflow_call: | |
| inputs: | |
| install-system-dependencies: | |
| description: Check for and install system dependencies | |
| required: false | |
| default: false | |
| type: boolean | |
| enable-staged-dependencies-check: | |
| description: Enable staged dependencies YAML check | |
| required: false | |
| default: false | |
| type: boolean | |
| publish-coverage-report: | |
| description: Publish the coverage report as a pull request comment | |
| required: false | |
| default: true | |
| type: boolean | |
| allow-failure: | |
| description: Allow workflow failure if errors from covtracer are generated | |
| required: false | |
| type: boolean | |
| default: false | |
| enable-covtracer: | |
| description: Enable the covtracer job | |
| required: false | |
| type: boolean | |
| default: false | |
| additional-env-vars: | |
| description: | | |
| Extra environment variables, as a 'key=value' pair, with each pair on a new line. | |
| Example usage: | |
| additional-env-vars: | | |
| ABC=123 | |
| XYZ=456 | |
| required: false | |
| default: "" | |
| type: string | |
| sd-direction: | |
| description: The direction to use to install staged dependencies. Choose between 'upstream', 'downstream' and 'all' | |
| required: false | |
| type: string | |
| default: upstream | |
| publish-coverage-report-gh-pages: | |
| description: Publish HTML coverage report to GitHub pages alongside pkgdown docs. | |
| required: false | |
| type: boolean | |
| default: true | |
| latest-tag-alt-name: | |
| description: | | |
| The name of directory to store coverage report when running for latest tag. | |
| The variable is named this way to keep it consistent with r-pkgdown-multiversion input name. | |
| required: false | |
| type: string | |
| default: "latest-tag" | |
| release-candidate-alt-name: | |
| description: | | |
| The name of directory to store coverage report when running for rc tag. | |
| The variable is named this way to keep it consistent with r-pkgdown-multiversion input name. | |
| required: false | |
| type: string | |
| default: "release-candidate" | |
| package-subdirectory: | |
| description: Subdirectory in the repository, where the R package is located. | |
| required: false | |
| type: string | |
| default: "" | |
| secrets: | |
| REPO_GITHUB_TOKEN: | |
| description: | | |
| Github token with read access to repositories, required | |
| for staged.dependencies installation | |
| required: false | |
| concurrency: | |
| group: coverage-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| coverage: | |
| name: Coverage 📔 | |
| runs-on: ubuntu-latest | |
| if: > | |
| !contains(github.event.commits[0].message, '[skip coverage]') | |
| && github.event.pull_request.draft == false | |
| container: | |
| image: ghcr.io/insightsengineering/rstudio:latest | |
| outputs: | |
| publish-coverage-html-report: ${{ steps.coverage-output.outputs.coverage-upload }} | |
| current-branch-or-tag: ${{ steps.current-branch-or-tag.outputs.ref-name }} | |
| is-latest-tag: ${{ steps.current-branch-or-tag.outputs.is-latest-tag }} | |
| is-rc-tag: ${{ steps.current-branch-or-tag.outputs.is-rc-tag }} | |
| multiversion-docs: ${{ steps.current-branch-or-tag.outputs.multiversion-docs }} | |
| steps: | |
| - name: Setup token 🔑 | |
| id: github-token | |
| run: | | |
| if [ "${{ secrets.REPO_GITHUB_TOKEN }}" == "" ]; then | |
| echo "REPO_GITHUB_TOKEN is empty. Substituting it with GITHUB_TOKEN." | |
| echo "token=${{ secrets.GITHUB_TOKEN }}" >> $GITHUB_OUTPUT | |
| else | |
| echo "Using REPO_GITHUB_TOKEN." | |
| echo "token=${{ secrets.REPO_GITHUB_TOKEN }}" >> $GITHUB_OUTPUT | |
| fi | |
| shell: bash | |
| - name: Get branch names 🌿 | |
| id: branch-name | |
| uses: tj-actions/branch-names@v7 | |
| - name: Checkout gh-pages 🛎 | |
| if: >- | |
| github.event_name != 'pull_request' | |
| && inputs.publish-coverage-report-gh-pages == true | |
| id: checkout-gh-pages | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: gh-pages | |
| path: gh-pages | |
| repository: ${{ github.event.pull_request.head.repo.full_name }} | |
| - name: Get current branch or tag 🏷️ | |
| if: >- | |
| github.event_name != 'pull_request' | |
| && inputs.publish-coverage-report-gh-pages == true | |
| id: current-branch-or-tag | |
| run: | | |
| if [ "${{ steps.branch-name.outputs.is_tag }}" == "true" ]; then | |
| echo "Current tag: ${{ steps.branch-name.outputs.tag }}" | |
| echo "ref-name=${{ steps.branch-name.outputs.tag }}" >> $GITHUB_OUTPUT | |
| current_tag="${{ steps.branch-name.outputs.tag }}" | |
| if [ "$(echo "$current_tag" | grep -E "^v([0-9]+\.)?([0-9]+\.)?([0-9]+)$")" != "" ]; then | |
| echo "Running for latest-tag." | |
| echo "is-latest-tag=true" >> $GITHUB_OUTPUT | |
| elif [ "$(echo "$current_tag" | grep -E "^v([0-9]+\.)?([0-9]+\.)?([0-9]+)(-rc[0-9]+)$")" != "" ]; then | |
| echo "Running for rc-tag." | |
| echo "is-rc-tag=true" >> $GITHUB_OUTPUT | |
| fi | |
| else | |
| echo "Current branch: ${{ steps.branch-name.outputs.current_branch }}" | |
| echo "ref-name=${{ steps.branch-name.outputs.current_branch }}" >> $GITHUB_OUTPUT | |
| fi | |
| # Check if pkgdown multiversion docs are used at all. | |
| if [ $(grep -rl '<!-- start dropdown for versions -->' gh-pages | wc -l) -gt 0 ]; then | |
| echo "multiversion-docs=true" >> $GITHUB_OUTPUT | |
| else | |
| echo "multiversion-docs=false" >> $GITHUB_OUTPUT | |
| fi | |
| shell: bash | |
| - name: Checkout repo (PR) 🛎 | |
| uses: actions/checkout@v4 | |
| if: github.event_name == 'pull_request' | |
| with: | |
| ref: ${{ steps.branch-name.outputs.head_ref_branch }} | |
| path: ${{ github.event.repository.name }} | |
| repository: ${{ github.event.pull_request.head.repo.full_name }} | |
| - name: Checkout repo 🛎 | |
| uses: actions/checkout@v4 | |
| if: github.event_name != 'pull_request' | |
| with: | |
| ref: ${{ steps.branch-name.outputs.head_ref_branch }} | |
| path: ${{ github.event.repository.name }} | |
| - name: Check commit message 💬 | |
| run: | | |
| git config --global --add safe.directory $(pwd) | |
| export head_commit_message="$(git show -s --format=%B | tr '\r\n' ' ' | tr '\n' ' ')" | |
| echo "head_commit_message = $head_commit_message" | |
| if [[ $head_commit_message == *"$SKIP_INSTRUCTION"* ]]; then | |
| echo "Skip instruction detected - cancelling the workflow." | |
| exit 1 | |
| fi | |
| shell: bash | |
| working-directory: ${{ github.event.repository.name }} | |
| env: | |
| SKIP_INSTRUCTION: "[skip coverage]" | |
| - name: Normalize inputs ⊳ | |
| id: normalizer | |
| shell: bash | |
| run: | | |
| echo "publish-coverage-report=${{ inputs.publish-coverage-report }}" >> $GITHUB_OUTPUT | |
| if [ "${{ inputs.publish-coverage-report }}" == "" ] | |
| then { | |
| echo "publish-coverage-report=true" >> $GITHUB_OUTPUT | |
| } | |
| fi | |
| - name: Restore SD cache 💰 | |
| uses: actions/cache@v4 | |
| with: | |
| key: sd-${{ runner.os }}-${{ github.event.repository.name }} | |
| path: ~/.staged.dependencies | |
| - name: Run Staged dependencies 🎦 | |
| uses: insightsengineering/staged-dependencies-action@v1 | |
| env: | |
| GITHUB_PAT: ${{ secrets.REPO_GITHUB_TOKEN }} | |
| with: | |
| path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }} | |
| enable-check: ${{ inputs.enable-staged-dependencies-check }} | |
| run-system-dependencies: ${{ inputs.install-system-dependencies }} | |
| direction: ${{ inputs.sd-direction }} | |
| - name: Install R package 🚧 | |
| run: | | |
| if (file.exists("renv.lock")) renv::restore() | |
| install.packages(".", repos=NULL, type="source") | |
| shell: Rscript {0} | |
| working-directory: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }} | |
| - name: Install covr 🎪 | |
| run: | | |
| if (file.exists("renv.lock")) { | |
| renv::restore() | |
| if (!require("covr")) renv::install("covr") | |
| } | |
| if (!require("covr")) install.packages("covr") | |
| shell: Rscript {0} | |
| - name: Run coverage 👟 | |
| run: | | |
| setwd("${{ github.event.repository.name }}/${{ inputs.package-subdirectory }}") | |
| if (file.exists("renv.lock")) { | |
| renv::restore() | |
| } | |
| # Load extra env vars | |
| extra_env_vars <- "${{ inputs.additional-env-vars }}" | |
| if (extra_env_vars != "") { | |
| writeLines(extra_env_vars, "/tmp/dotenv.env") | |
| if (!require("dotenv")) install.packages("dotenv", repos = "https://cloud.r-project.org") | |
| dotenv::load_dot_env("/tmp/dotenv.env") | |
| } | |
| tryCatch( | |
| expr = { | |
| x <- covr::package_coverage( | |
| clean = FALSE, | |
| quiet = FALSE | |
| ) | |
| print(x) | |
| covr::report( | |
| x, | |
| file = "coverage-report.html", | |
| browse = FALSE | |
| ) | |
| covr::to_cobertura(x, filename = "coverage.xml") | |
| p <- covr::percent_coverage(x) | |
| cat(p, file = "coverage.txt", sep = "") | |
| }, | |
| error = function(e) { | |
| message("Errors generated during coverage analysis:") | |
| print(e) | |
| error_file <- list.files(path = "/tmp", pattern="*.fail$", recursive = T, full.names = T)[1] | |
| if (length(error_file) && file.exists(error_file)) { | |
| cat("__________FULL OUTPUT__________") | |
| writeLines(readLines(error_file)) | |
| } | |
| } | |
| ) | |
| covr_html <- "coverage-report.html" | |
| if (!file.exists(covr_html)) writeLines(c("No coverage report."), covr_html) | |
| shell: Rscript {0} | |
| - name: Check whether coverage reports exists 💭 | |
| id: check_coverage_reports | |
| uses: andstor/file-existence-action@v3 | |
| with: | |
| files: >- | |
| ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }}/coverage.xml, | |
| ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }}/coverage.txt, | |
| ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }}/coverage-report.html | |
| - name: Post coverage report 🗞 | |
| if: steps.check_coverage_reports.outputs.files_exists == 'true' | |
| uses: insightsengineering/coverage-action@v2 | |
| with: | |
| path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }}/coverage.xml | |
| threshold: 80 | |
| fail: false | |
| publish: ${{ steps.normalizer.outputs.publish-coverage-report }} | |
| diff: true | |
| continue-on-error: true | |
| - name: Upload report 🔼 | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-report | |
| path: | | |
| ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }}/coverage-report.html | |
| ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }}/lib/ | |
| continue-on-error: true | |
| - name: Set output ⚙️ | |
| id: coverage-output | |
| if: >- | |
| github.event_name != 'pull_request' | |
| && inputs.publish-coverage-report-gh-pages == true | |
| run: echo "coverage-upload=true" >> $GITHUB_OUTPUT | |
| covtracer: | |
| name: Covtracer 🐄 | |
| runs-on: ubuntu-latest | |
| if: > | |
| !contains(github.event.commits[0].message, '[skip coverage]') | |
| && github.event.pull_request.draft == false | |
| && contains(inputs.enable-covtracer, 'true') | |
| container: | |
| image: ghcr.io/insightsengineering/rstudio:latest | |
| steps: | |
| - name: Get branch names 🌿 | |
| id: branch-name | |
| uses: tj-actions/branch-names@v7 | |
| - name: Checkout repo (PR) 🛎 | |
| uses: actions/checkout@v4 | |
| if: github.event_name == 'pull_request' | |
| with: | |
| ref: ${{ steps.branch-name.outputs.head_ref_branch }} | |
| path: ${{ github.event.repository.name }} | |
| repository: ${{ github.event.pull_request.head.repo.full_name }} | |
| - name: Checkout repo 🛎 | |
| uses: actions/checkout@v4 | |
| if: github.event_name != 'pull_request' | |
| with: | |
| ref: ${{ steps.branch-name.outputs.head_ref_branch }} | |
| path: ${{ github.event.repository.name }} | |
| - name: Check commit message 💬 | |
| run: | | |
| git config --global --add safe.directory $(pwd) | |
| export head_commit_message="$(git show -s --format=%B | tr '\r\n' ' ' | tr '\n' ' ')" | |
| echo "head_commit_message = $head_commit_message" | |
| if [[ $head_commit_message == *"$SKIP_INSTRUCTION"* ]]; then | |
| echo "Skip instruction detected - cancelling the workflow." | |
| exit 1 | |
| fi | |
| shell: bash | |
| working-directory: ${{ github.event.repository.name }} | |
| env: | |
| SKIP_INSTRUCTION: "[skip coverage]" | |
| - name: Restore SD cache 💰 | |
| uses: actions/cache@v4 | |
| with: | |
| key: sd-${{ runner.os }}-${{ github.event.repository.name }} | |
| path: ~/.staged.dependencies | |
| - name: Run Staged dependencies 🎦 | |
| uses: insightsengineering/staged-dependencies-action@v1 | |
| env: | |
| GITHUB_PAT: ${{ steps.github-token.outputs.token }} | |
| with: | |
| path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }} | |
| enable-check: ${{ inputs.enable-staged-dependencies-check }} | |
| run-system-dependencies: ${{ inputs.install-system-dependencies }} | |
| direction: ${{ inputs.sd-direction }} | |
| - name: Run Covtracer 🐄 | |
| uses: insightsengineering/covtracer-action@v1 | |
| env: | |
| GITHUB_PAT: ${{ steps.github-token.outputs.token }} | |
| with: | |
| path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }} | |
| allow-failure: ${{ inputs.allow-failure }} | |
| publish-coverage-report: | |
| name: Publish coverage report 📰 | |
| runs-on: ubuntu-latest | |
| needs: coverage | |
| if: > | |
| needs.coverage.outputs.publish-coverage-html-report == 'true' | |
| && github.event_name != 'pull_request' | |
| # Only one job can publish to gh-pages branch concurrently. | |
| concurrency: | |
| group: ghpages | |
| steps: | |
| - name: Setup token 🔑 | |
| id: github-token | |
| run: | | |
| if [ "${{ secrets.REPO_GITHUB_TOKEN }}" == "" ]; then | |
| echo "REPO_GITHUB_TOKEN is empty. Substituting it with GITHUB_TOKEN." | |
| echo "token=${{ secrets.GITHUB_TOKEN }}" >> $GITHUB_OUTPUT | |
| else | |
| echo "Using REPO_GITHUB_TOKEN." | |
| echo "token=${{ secrets.REPO_GITHUB_TOKEN }}" >> $GITHUB_OUTPUT | |
| fi | |
| shell: bash | |
| - name: Download coverage report as artifact ⤵️ | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: coverage-report | |
| path: coverage-report | |
| - name: Rename report ⚙️ | |
| run: mv coverage-report/coverage-report.html coverage-report/index.html | |
| - name: Upload coverage report to GitHub pages 🗞️ | |
| if: needs.coverage.outputs.multiversion-docs == 'true' | |
| uses: peaceiris/actions-gh-pages@v3 | |
| with: | |
| github_token: ${{ steps.github-token.outputs.token }} | |
| publish_dir: ./coverage-report | |
| destination_dir: ${{ needs.coverage.outputs.current-branch-or-tag }}/coverage-report | |
| - name: Upload coverage report to GitHub pages (latest-tag) 🏷️ | |
| if: > | |
| needs.coverage.outputs.is-latest-tag == 'true' | |
| && needs.coverage.outputs.multiversion-docs == 'true' | |
| uses: peaceiris/actions-gh-pages@v3 | |
| with: | |
| github_token: ${{ steps.github-token.outputs.token }} | |
| publish_dir: ./coverage-report | |
| destination_dir: ${{ inputs.latest-tag-alt-name }}/coverage-report | |
| - name: Upload coverage report to GitHub pages (release-candidate) 🏷️ | |
| if: > | |
| needs.coverage.outputs.is-rc-tag == 'true' | |
| && needs.coverage.outputs.multiversion-docs == 'true' | |
| uses: peaceiris/actions-gh-pages@v3 | |
| with: | |
| github_token: ${{ steps.github-token.outputs.token }} | |
| publish_dir: ./coverage-report | |
| destination_dir: ${{ inputs.release-candidate-alt-name }}/coverage-report | |
| - name: Upload coverage report to GitHub pages (non-multiversion) 🗞️ | |
| if: needs.coverage.outputs.multiversion-docs == 'false' | |
| uses: peaceiris/actions-gh-pages@v3 | |
| with: | |
| github_token: ${{ steps.github-token.outputs.token }} | |
| publish_dir: ./coverage-report | |
| destination_dir: coverage-report |