update tests

R/t_dm_slide.R

@@ -22,7 +22,7 @@
 #'
 t_dm_slide <- function(adsl,
                        arm = "TRT01P",
-                       vars = c("AGEGR1", "SEX", "RACE", "BECOG", "BBMI"),
+                       vars = c("AGE", "SEX", "RACE"),
                        stats = c("median", "range", "count_fraction"),
                        split_by_study = FALSE,
                        side_by_side = NULL) {

R/util.R

@@ -669,19 +669,6 @@ lyt_to_side_by_side_two_data <- function(lyt, anl, alt_counts_df, side_by_side =
   return(result)
 }
 
-#' Checker of data frame display per patient (or not)
-#'
-#' @param pp per patient
-#' @param colname name of column
-if_display_pp <- function(pp, colname = FALSE) {
-  if (!pp) {
-    if (!colname) {
-      return("USUBJID")
-    }
-    return("Patient ID")
-  }
-  return(NULL)
-}
 
 do_call <- function(fun, ...) {
   args <- list(...)

tests/testthat/test-save_output.R

@@ -1,44 +1,44 @@
 test_that("save an output", {
-  output <- t_ds_slide(adsl = testdata$adsl) %>% decorate(title = "test title", footnote = "")
+  output <- t_dm_slide(adsl = testdata$adsl) %>% decorate(title = "test title", footnote = "")
   testthat::expect_no_error(
     save_output(
       output,
-      file_name = "t_ds_output",
+      file_name = "t_dm_output",
       save_rds = TRUE
     )
   )
 })
 
 
-test_that("Test save_output (Save an Output)", {
-  library(dplyr)
-  adsl <- eg_adsl %>%
-    mutate(TRT01A = factor(TRT01A, levels = c("A: Drug X", "B: Placebo")))
-  adae <- eg_adae %>%
-    mutate(TRT01A = factor(TRT01A, levels = c("A: Drug X", "B: Placebo")))
-  adae$ATOXGR <- adae$AETOXGR
-  output_dir <- tempdir()
+# test_that("Test save_output (Save an Output)", {
+#   library(dplyr)
+#   adsl <- eg_adsl %>%
+#     mutate(TRT01A = factor(TRT01A, levels = c("A: Drug X", "B: Placebo")))
+#   adae <- eg_adae %>%
+#     mutate(TRT01A = factor(TRT01A, levels = c("A: Drug X", "B: Placebo")))
+#   adae$ATOXGR <- adae$AETOXGR
+#   output_dir <- tempdir()
+#
+#   expect_snapshot(print(t_ae_pt_slide(adsl, adae, "TRT01A", 2) %>%
+#     decorate(
+#       title = "Serious Adverse Events, Safety-Evaluable Patients",
+#       footnote = "",
+#       paper = "P8",
+#       for_test = TRUE
+#     ) %>%
+#     save_output(
+#       file_name = file.path(output_dir, "t_ae_SER_SE"),
+#       save_rds = TRUE
+#     )))
+# })
 
-  expect_snapshot(print(t_ae_pt_slide(adsl, adae, "TRT01A", 2) %>%
-    decorate(
-      title = "Serious Adverse Events, Safety-Evaluable Patients",
-      footnote = "",
-      paper = "P8",
-      for_test = TRUE
-    ) %>%
-    save_output(
-      file_name = file.path(output_dir, "t_ae_SER_SE"),
-      save_rds = TRUE
-    )))
-})
-
-test_that("save an output", {
-  output <- t_ds_slide(adsl = testdata$adsl) %>% decorate(title = "test title", footnote = "")
-  testthat::expect_no_error(
-    save_output(
-      output,
-      file_name = "t_ds_output",
-      save_rds = TRUE
-    )
-  )
-})
+# test_that("save an output", {
+#   output <- t_ds_slide(adsl = testdata$adsl) %>% decorate(title = "test title", footnote = "")
+#   testthat::expect_no_error(
+#     save_output(
+#       output,
+#       file_name = "t_ds_output",
+#       save_rds = TRUE
+#     )
+#   )
+# })