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adding Le Petit Prince to public repo #3
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5a46311
initial commit: adding Le Petit Prince to public repo
man-shu 8611c04
comment in readme about audio files on open neuro
man-shu b5595ea
update lpp readme
man-shu 19b25ac
add open neuro link
man-shu 1e45d3f
fixing event labels on localizer
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## Display settings | ||
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* Clone the primary display to the slave monitor. | ||
* Display resolution - 1920 x 1080, refresh rate - 60 Hz. | ||
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## How to run | ||
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* Download the audio files (`.wav` files with suffix `task-lppFR`) from OpenNeuro: https://openneuro.org/datasets/ds003643/versions/2.0.1 | ||
* Print the `protocol/questions_reponses_a_imprimer.pdf` file to mark participant's answers after each run | ||
* Go into the task folder: | ||
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``` | ||
$ cd le_petit_prince/protocol | ||
``` | ||
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### Practice | ||
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* No practice | ||
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### Scanner task | ||
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* Run the script `run-lepetitprince-mri.sh` as follows: | ||
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``` | ||
$ sh run-lepetitprince-mri.sh | ||
``` | ||
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* Select the run and press Enter. | ||
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* Ask the questions after each run and mark the answers on the printed sheet. Open the file `questions_a_presenter.pdf` for the participant with the command shown, eg.: | ||
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``` | ||
$ evince -s -p 4 questions_a_presenter.pdf | ||
``` | ||
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* This would open the pdf at page 4 after run 1 and similarly, prompts after each run show corresponding page number in the pdf. | ||
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## How to quit | ||
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Don't. (`Ctrl + C` in emergency) | ||
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## Responses | ||
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* No responses except for the verbal ones after each acquisition run | ||
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## Design | ||
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* 2 sessions | ||
* 5 runs (session 1) + 4 runs and 1 localizer (session 2) | ||
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## Software info | ||
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* Python 3.8.5, Expyriment 0.10.0. | ||
* Primary script `run-lepetitprince-mri.sh` | ||
* Secondary scripts `lepp_mri.py` for runs 1-9 and `localizer/localizer-speech.py` for the localizer. | ||
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## Other info | ||
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* Specified paths and scripts were originally run and tested on Ubuntu OS, so might need mods for running on Windows OS. | ||
* `instructions_for_participants` contain original instructions in French and their English translations (from Google Translate) with `EN_` prefix | ||
* same goes for `protocol/questions_reponses_a_imprimer.pdf` and `protocol/questions_a_presenter.pdf` |
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subj,ntrial,cond,sent_dur,fname,sent_onset | ||
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#! /usr/bin/env python | ||
# updated: <2016-02-04 Esther LIN> | ||
# -*- coding: utf-8 -*- | ||
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import pandas as pd | ||
import os.path as op | ||
import sys | ||
import expyriment | ||
from expyriment import design, control, stimuli, io, misc | ||
import pygame | ||
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pygame.init() | ||
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''' | ||
sent1 = stimuli.Audio("fr_localizer_03_22050.wav") | ||
sent1.preload() | ||
sent1.present() | ||
''' | ||
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if len(sys.argv) < 2: | ||
print(sys.argv[0] + " csvfile") | ||
print("The csvfile must contained the list of stimuli and onset times") | ||
sys.exit() | ||
else: | ||
stimuli_table = sys.argv[1] | ||
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exp = design.Experiment(name="bilingue_localizer") | ||
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# comment out the following two lines if running the real experiment: | ||
control.set_develop_mode(True) | ||
control.defaults.open_gl = 2 | ||
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''' | ||
FIXATION_DURATION = 1000 | ||
WORD_DURATION = 300 | ||
BLOC_DURATION = 6000 | ||
RESPONSE_KEYS = [misc.constants.K_b, misc.constants.K_y] | ||
MAX_RESPONSE_DURATION = 1000 # need to be less than (900 + min ITI) | ||
''' | ||
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## | ||
control.initialize(exp) | ||
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## load the stimuli table into a block of trials | ||
stim_tbl = pd.read_csv(stimuli_table) | ||
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block = design.Block(name="block1") | ||
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trial_items = [] | ||
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for (i, stim_info) in stim_tbl.iterrows(): | ||
trial = design.Trial() | ||
trial.set_factor("subj", stim_info.subj) | ||
trial.set_factor("nbloc", stim_info.nbloc) | ||
trial.set_factor("langue", stim_info.langue) | ||
trial.set_factor("sent_onset", stim_info.sent_onset) | ||
trial.set_factor("sent_dur", stim_info.sent_dur) | ||
trial.set_factor("stims", stim_info.fname) | ||
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sound_fnames = [str("./sound_files/"+stim_info['fname'])] | ||
trial_items.append(sound_fnames) | ||
# transform the strings into surfaces to be blit on the screen | ||
for w in sound_fnames: | ||
stim = stimuli.Audio(w) | ||
trial.add_stimulus(stim) | ||
block.add_trial(trial) | ||
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exp.add_block(block) # note that there is only one block in this experiment | ||
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exp.data_variable_names = ["subj", "nbloc", "langue", "sent_onset", | ||
"real_sentence_onset_before","real_sentence_onset_after","sent_dur","filename"] | ||
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### A few useful objects and functions | ||
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## define fixation crosses | ||
fixcrossGreen = stimuli.FixCross(size=(45, 45), line_width=5, | ||
colour=(0, 255, 0)) | ||
fixcrossGreen.preload() | ||
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fixcrossGrey = stimuli.FixCross(size=(45, 45), line_width=3, | ||
colour=(192, 192, 192)) | ||
fixcrossGrey.preload() | ||
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''' | ||
http://www.rapidtables.com/web/color/silver-color.htm | ||
lightgray rgb(211,211,211) | ||
silver rgb(192,192,192) | ||
darkgray rgb(169,169,169) | ||
gray rgb(128,128,128) | ||
''' | ||
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def clear_screen(): | ||
exp.screen.clear() | ||
exp.screen.update() | ||
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def wait_for_MRI_synchro(): | ||
fixcrossGreen.present(clear=True, update=True) | ||
exp.keyboard.wait_char('t') | ||
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def wait_until(clock, time): | ||
# busy loop wait | ||
while (clock.time < time): | ||
pass | ||
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############ MAIN LOOP | ||
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control.start(exp) | ||
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for block in exp.blocks: | ||
wait_for_MRI_synchro() | ||
clear_screen() | ||
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# present the fixation cross | ||
fixcrossGrey.present() | ||
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clock = expyriment.misc.Clock() | ||
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for itrial, trial in enumerate(block.trials): | ||
#print "Trial: #"+itrial | ||
for stim in trial.stimuli: | ||
stim.preload() | ||
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# present the sentence | ||
wait_until(clock, trial.get_factor("sent_onset")) | ||
real_sentence_onset_before = clock.time | ||
stim.present() | ||
real_sentence_onset_after = clock.time | ||
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io.Keyboard.process_control_keys() | ||
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exp.data.add([trial.get_factor("subj"), trial.get_factor('nbloc'), | ||
trial.get_factor('langue'), trial.get_factor('sent_onset'), | ||
real_sentence_onset_before,real_sentence_onset_after,trial.get_factor('sent_dur')," ".join(trial_items[itrial])]) | ||
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control.end() |
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I had added the openneuro link in the README. We should probably add more info about where to save these stim files so that the script can find it.
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Maybe in that case having the files directly here is better, so that we don't give much room for confusion?
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We definitely can put the files here, Christophe also said so. We were discussing simply pointing to openneuro, so as to avoid any legal issues and having to take them down from multiple places in the future.
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I may have said the converse recently, But I think that it's OK to just have the link.