clean and lint #2319
Workflow file for this run
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| # ----------------------------------------------------------------------------- | |
| # - invoked on push, pull_request, manual trigger, or schedule | |
| # - test under at least 3 versions of python | |
| # ----------------------------------------------------------------------------- | |
| name: build | |
| on: | |
| push: | |
| pull_request: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: "0 8 * * *" | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11"] | |
| defaults: | |
| run: | |
| shell: bash -le {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: get upstream branch name | |
| run: | | |
| if "${{ github.event_name == 'pull_request' }}" ; then | |
| echo "branch_name=${GITHUB_HEAD_REF}" >> $GITHUB_ENV | |
| else | |
| echo "branch_name=${GITHUB_REF_NAME}" >> $GITHUB_ENV | |
| fi | |
| - name: Update pip | |
| run: | | |
| python -m pip install --upgrade pip | |
| - name: Install dependencies | |
| run: | | |
| pip install .[dev] | |
| git checkout ${branch_name} | |
| - name: check for dependency branches and install if needed | |
| run: | | |
| cd .. | |
| git clone https://github.com/ihmeuw/vivarium_build_utils.git | |
| cd vivarium_public_health | |
| echo "Contents of install_dependency_branch.sh" | |
| echo "----------------------------------------" | |
| cat ../vivarium_build_utils/install_dependency_branch.sh | |
| echo "" | |
| echo "----------------------------------------" | |
| sh ../vivarium_build_utils/install_dependency_branch.sh layered_config_tree ${branch_name} github | |
| sh ../vivarium_build_utils/install_dependency_branch.sh vivarium ${branch_name} github | |
| sh ../vivarium_build_utils/install_dependency_branch.sh risk_distributions ${branch_name} github | |
| - name: print environment values | |
| run: | | |
| cat $GITHUB_ENV | |
| - name: Lint | |
| run: | | |
| pip install black==22.3.0 isort | |
| isort . --check --verbose --only-modified --diff | |
| black . --check --diff | |
| - name: Test | |
| run: | | |
| if "${{ github.event_name == 'schedule' }}"; then | |
| pytest --runslow ./tests | |
| else | |
| pytest ./tests | |
| fi | |
| - name: Doc build | |
| run: | | |
| make html -C docs/ SPHINXOPTS="-W --keep-going -n" | |
| - name: Doctest | |
| run: | | |
| make doctest -C docs/ | |
| - name: Send mail | |
| # Notify when cron job fails | |
| if: (github.event_name == 'schedule' && failure()) | |
| uses: dawidd6/action-send-mail@v2 | |
| with: | |
| # mail server settings | |
| server_address: smtp.gmail.com | |
| server_port: 465 | |
| # user credentials | |
| username: ${{ secrets.NOTIFY_EMAIL }} | |
| password: ${{ secrets.NOTIFY_PASSWORD }} | |
| # email subject | |
| subject: ${{ github.job }} job of ${{ github.repository }} has ${{ job.status }} | |
| # email body as text | |
| body: ${{ github.job }} job in worflow ${{ github.workflow }} of ${{ github.repository }} has ${{ job.status }} | |
| # comma-separated string, send email to | |
| to: [email protected] | |
| # from email name | |
| from: Vivarium Notifications |