0.0.5 (#6)

* fix the bug in the pre_selected_covs processing

* update version to 0.0.5

* pine dependency on mrtool to 0.1.4

pyproject.toml

@@ -4,15 +4,15 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "bopforge"
-version = "0.0.4"
+version = "0.0.5"
 description = "Pipelines for Burden of Proof (BoP) analyses"
 readme = "REDME.md"
 requires-python = ">=3.10"
 license = { file = "LICENSE" }
 authors = [
     { name = "IHME Math Sciences", email = "[email protected]" },
 ]
-dependencies = ["numpy", "scipy", "pandas", "matplotlib", "mrtool", "pplkit"]
+dependencies = ["numpy", "scipy", "pandas", "matplotlib", "mrtool==0.1.4", "pplkit"]
 
 [project.optional-dependencies]
 test = ["pytest"]

src/bopforge/continuous_pipeline/__main__.py

@@ -26,8 +26,8 @@ def pre_processing(dataif: DataInterface) -> None:
     df.drop(columns=covs_to_remove, inplace=True)
 
     # remove from settings
-    all_covs = set(all_covs)
-    covs_to_remove = set(covs_to_remove)
+    all_covs = set("em" + col[3:] for col in all_covs)
+    covs_to_remove = set("em" + col[3:] for col in covs_to_remove)
     pre_selected_covs = set(settings["pre_selected_covs"])
     pre_selected_covs = pre_selected_covs & all_covs
     pre_selected_covs = pre_selected_covs - covs_to_remove