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Hubs #1445

Merged
merged 9 commits into from
Nov 27, 2023
Merged

Hubs #1445

merged 9 commits into from
Nov 27, 2023

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jrobinso
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* Reimplement BB reader -- work in progress
* Implement track hub parser
* Rewrite of BB is complete
* Chromosome aliasing rewrite complete
* Removed old MethylTrack and associated files
@jrobinso jrobinso merged commit bcdd371 into master Nov 27, 2023
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@jrobinso jrobinso deleted the hubs branch November 27, 2023 18:21
jrobinso added a commit that referenced this pull request Dec 4, 2023
Add support for UCSC track hubs.    Includes readers for twobit, UCSC b+ trees, and trix files.   This also includes a complete rewrite of bigbed/bigwig readers, and a refactoring of "Genome" related classes.
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