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Remove "bam" files from ENCODE lists, they aren't indexed.
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@jrobinso
jrobinso committed Feb 7, 2024
1 parent b4e9f03 commit 62e834b
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6 changes: 0 additions & 6 deletions src/main/resources/org/broad/igv/util/encode/encode.hg18.txt
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Expand Up @@ -243,12 +243,8 @@ http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeDukeAffyExonArr
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeDukeAffyExonArray/wgEncodeDukeAffyExonArraySimpleSignalRep3Gm18507.broadPeak.gz GM18507 AffyExonArray 3 broadPeak Duke
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeDukeAffyExonArray/wgEncodeDukeAffyExonArraySimpleSignalRep3Helas3.broadPeak.gz HeLa-S3 AffyExonArray 3 broadPeak Duke
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeDukeAffyExonArray/wgEncodeDukeAffyExonArraySimpleSignalRep3Hepg2.broadPeak.gz HepG2 AffyExonArray 3 broadPeak Duke
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeHudsonalphaChipSeq/wgEncodeHudsonalphaChipSeqA549ControlPcr2xDex100nmAlnRep1.bam A549 ChipSeq RevXlinkChromatin Alignments 1 bam HudsonAlpha
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeHudsonalphaChipSeq/wgEncodeHudsonalphaChipSeqA549ControlPcr2xDex100nmRawRep1.bigWig A549 ChipSeq RevXlinkChromatin RawSignal 1 bigWig HudsonAlpha
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeHudsonalphaChipSeq/wgEncodeHudsonalphaChipSeqGm12878ControlPcr1xAlnRep2.bam GM12878 ChipSeq RevXlinkChromatin Alignments 2 bam HudsonAlpha
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeHudsonalphaChipSeq/wgEncodeHudsonalphaChipSeqGm12878ControlPcr1xRawRep2.bigWig GM12878 ChipSeq RevXlinkChromatin RawSignal 2 bigWig HudsonAlpha
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeHudsonalphaChipSeq/wgEncodeHudsonalphaChipSeqHepg2ControlPcr2xAlnRep1.bam HepG2 ChipSeq RevXlinkChromatin Alignments 1 bam HudsonAlpha
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeHudsonalphaChipSeq/wgEncodeHudsonalphaChipSeqHepg2ControlPcr2xAlnRep2.bam HepG2 ChipSeq RevXlinkChromatin Alignments 2 bam HudsonAlpha
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeHudsonalphaChipSeq/wgEncodeHudsonalphaChipSeqHepg2ControlPcr2xRawRep1.bigWig HepG2 ChipSeq RevXlinkChromatin RawSignal 1 bigWig HudsonAlpha
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeHudsonalphaChipSeq/wgEncodeHudsonalphaChipSeqHepg2ControlPcr2xRawRep2.bigWig HepG2 ChipSeq RevXlinkChromatin RawSignal 2 bigWig HudsonAlpha
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeHudsonalphaChipSeq/wgEncodeHudsonalphaChipSeqPeaksA549Gr.broadPeak.gz A549 ChipSeq GR Peaks 1 broadPeak HudsonAlpha
Expand Down Expand Up @@ -370,8 +366,6 @@ http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeHudsonalphaChip
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeHudsonalphaChipSeq/wgEncodeHudsonalphaChipSeqPeaksRep2Pfsk1Nrsf.broadPeak.gz PFSK-1 ChipSeq NRSF Peaks 2 broadPeak HudsonAlpha
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeHudsonalphaChipSeq/wgEncodeHudsonalphaChipSeqPeaksRep2SknshNrsf.broadPeak.gz SK-N-SH ChipSeq NRSF Peaks 2 broadPeak HudsonAlpha
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeHudsonalphaChipSeq/wgEncodeHudsonalphaChipSeqPeaksRep2U87Nrsf.broadPeak.gz U87 ChipSeq NRSF Peaks 2 broadPeak HudsonAlpha
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeHudsonalphaChipSeq/wgEncodeHudsonalphaChipSeqPfsk1ControlPcr2xAlnRep1.bam PFSK-1 ChipSeq RevXlinkChromatin Alignments 1 bam HudsonAlpha
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeHudsonalphaChipSeq/wgEncodeHudsonalphaChipSeqPfsk1ControlPcr2xAlnRep2.bam PFSK-1 ChipSeq RevXlinkChromatin Alignments 2 bam HudsonAlpha
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeHudsonalphaChipSeq/wgEncodeHudsonalphaChipSeqPfsk1ControlPcr2xRawRep1.bigWig PFSK-1 ChipSeq RevXlinkChromatin RawSignal 1 bigWig HudsonAlpha
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeHudsonalphaChipSeq/wgEncodeHudsonalphaChipSeqPfsk1ControlPcr2xRawRep2.bigWig PFSK-1 ChipSeq RevXlinkChromatin RawSignal 2 bigWig HudsonAlpha
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeHudsonalphaCnv/wgEncodeHudsonalphaCnvRegionsGM12878V2.bed.gz GM12878 Genotype Regions bed HudsonAlpha
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