chore: Results from revdepcheck

igraph · Sep 18, 2024 · fee6655 · fee6655
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diff --git a/revdep/README.md b/revdep/README.md
@@ -1,6 +1,6 @@
 # Revdeps
 
-## Failed to check (33)
+## Failed to check (34)
 
 |package               |version |error |warning |note |
 |:---------------------|:-------|:-----|:-------|:----|
@@ -29,6 +29,7 @@
 |ohun                  |?       |      |        |     |
 |pagoda2               |?       |      |        |     |
 |PathwaySpace          |?       |      |        |     |
+|pcvr                  |1.0.0   |1     |        |     |
 |piecewiseSEM          |?       |      |        |     |
 |RGraphSpace           |?       |      |        |     |
 |rTwig                 |1.1.0   |1     |        |     |
@@ -38,15 +39,13 @@
 |SubtypeDrug           |?       |      |        |     |
 |topologyGSA           |?       |      |        |     |
 
-## New problems (7)
+## New problems (5)
 
-|package   |version |error  |warning |note   |
-|:---------|:-------|:------|:-------|:------|
-|[isotracer](problems.md#isotracer)|1.1.6   |__+1__ |1       |3      |
-|[manynet](problems.md#manynet)|1.0.5   |__+1__ |        |2      |
-|[MetaNet](problems.md#metanet)|0.1.2   |__+1__ |        |       |
-|[netropy](problems.md#netropy)|0.1.0   |__+2__ |        |__+1__ |
-|[R6causal](problems.md#r6causal)|0.8.3   |       |__+1__  |       |
-|[simcausal](problems.md#simcausal)|0.5.6   |__+1__ |        |1      |
-|[skynet](problems.md#skynet)|1.4.3   |__+1__ |        |1      |
+|package   |version |error  |warning  |note |
+|:---------|:-------|:------|:--------|:----|
+|[CePa](problems.md#cepa)|0.8.0   |       |1 __+1__ |     |
+|[manynet](problems.md#manynet)|1.0.5   |__+1__ |         |2    |
+|[MetaNet](problems.md#metanet)|0.1.2   |__+1__ |         |     |
+|[simcausal](problems.md#simcausal)|0.5.6   |__+1__ |         |1    |
+|[skynet](problems.md#skynet)|1.4.3   |__+1__ |         |1    |
 
diff --git a/revdep/cran.md b/revdep/cran.md
@@ -1,32 +1,24 @@
 ## revdepcheck results
 
-We checked 851 reverse dependencies (846 from CRAN + 5 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
+We checked 855 reverse dependencies (850 from CRAN + 5 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
 
- * We saw 7 new problems
- * We failed to check 28 packages
+ * We saw 5 new problems
+ * We failed to check 29 packages
 
 Issues with CRAN packages are summarised below.
 
 ### New problems
 (This reports the first line of each new failure)
 
-* isotracer
-  checking tests ... ERROR
+* CePa
+  checking Rd cross-references ... WARNING
 
 * manynet
   checking examples ... ERROR
 
 * MetaNet
   checking examples ... ERROR
 
-* netropy
-  checking examples ... ERROR
-  checking running R code from vignettes ... ERROR
-  checking re-building of vignette outputs ... NOTE
-
-* R6causal
-  checking whether package ‘R6causal’ can be installed ... WARNING
-
 * simcausal
   checking tests ... ERROR
 
@@ -57,6 +49,7 @@ Issues with CRAN packages are summarised below.
 * NetworkChange         (NA)
 * ohun                  (NA)
 * pagoda2               (NA)
+* pcvr                  (NA)
 * rTwig                 (NA)
 * Seurat                (NA)
 * speakeasyR            (NA)

diff --git a/revdep/failures.md b/revdep/failures.md
@@ -1648,6 +1648,76 @@ Run `revdepcheck::cloud_details(, "PathwaySpace")` for more info
 
 
 
+```
+# pcvr
+
+<details>
+
+* Version: 1.0.0
+* GitHub: https://github.com/danforthcenter/pcvr
+* Source code: https://github.com/cran/pcvr
+* Date/Publication: 2024-09-05 17:30:02 UTC
+* Number of recursive dependencies: 189
+
+Run `revdepcheck::cloud_details(, "pcvr")` for more info
+
+</details>
+
+## In both
+
+*   checking whether package ‘pcvr’ can be installed ... ERROR
+    ```
+    Installation failed.
+    See ‘/tmp/workdir/pcvr/new/pcvr.Rcheck/00install.out’ for details.
+    ```
+
+## Installation
+
+### Devel
+
+```
+* installing *source* package ‘pcvr’ ...
+** package ‘pcvr’ successfully unpacked and MD5 sums checked
+** using staged installation
+** R
+** inst
+** byte-compile and prepare package for lazy loading
+Warning in check_dep_version() :
+  ABI version mismatch: 
+lme4 was built with Matrix ABI version 1
+Current Matrix ABI version is 0
+Please re-install lme4 from source or restore original ‘Matrix’ package
+Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
+  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
+Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
+Execution halted
+ERROR: lazy loading failed for package ‘pcvr’
+* removing ‘/tmp/workdir/pcvr/new/pcvr.Rcheck/pcvr’
+
+
+```
+### CRAN
+
+```
+* installing *source* package ‘pcvr’ ...
+** package ‘pcvr’ successfully unpacked and MD5 sums checked
+** using staged installation
+** R
+** inst
+** byte-compile and prepare package for lazy loading
+Warning in check_dep_version() :
+  ABI version mismatch: 
+lme4 was built with Matrix ABI version 1
+Current Matrix ABI version is 0
+Please re-install lme4 from source or restore original ‘Matrix’ package
+Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
+  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
+Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
+Execution halted
+ERROR: lazy loading failed for package ‘pcvr’
+* removing ‘/tmp/workdir/pcvr/old/pcvr.Rcheck/pcvr’
+
+
 ```
 # piecewiseSEM