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# Revdeps | ||
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## Failed to check (3) | ||
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|package |version |error |warning |note | | ||
|:---------|:-------|:-----|:-------|:----| | ||
|bnlearn |5.0.1 |1 | | | | ||
|datapack |1.4.1 |1 | | | | ||
|streamDAG |? | | | | | ||
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## New problems (3) | ||
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|package |version |error |warning |note | | ||
|:---------|:-------|:------|:-------|:----| | ||
|[manynet](problems.md#manynet)|1.2.6 |__+1__ | |3 | | ||
|[simcausal](problems.md#simcausal)|0.5.6 |__+1__ |1 | | | ||
|[skynet](problems.md#skynet)|1.4.3 |__+1__ | |1 | | ||
|package |version |error |warning |note | | ||
|:----------|:-------|:------|:-------|:------| | ||
|[drake](problems.md#drake)|7.13.10 |__+1__ | | | | ||
|[sfnetworks](problems.md#sfnetworks)|0.6.4 |__+2__ | |__+1__ | | ||
|[targets](problems.md#targets)|1.9.0 |__+1__ | |2 | | ||
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## revdepcheck results | ||
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We checked 7 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. | ||
We checked 3 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. | ||
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* We saw 3 new problems | ||
* We failed to check 3 packages | ||
* We failed to check 0 packages | ||
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Issues with CRAN packages are summarised below. | ||
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### New problems | ||
(This reports the first line of each new failure) | ||
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* manynet | ||
checking tests ... ERROR | ||
* drake | ||
checking examples ... ERROR | ||
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* simcausal | ||
* sfnetworks | ||
checking tests ... ERROR | ||
checking running R code from vignettes ... ERROR | ||
checking re-building of vignette outputs ... NOTE | ||
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* skynet | ||
* targets | ||
checking tests ... ERROR | ||
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### Failed to check | ||
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* bnlearn (NA) | ||
* datapack (NA) | ||
* streamDAG (NA) |
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# bnlearn | ||
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<details> | ||
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* Version: 5.0.1 | ||
* GitHub: NA | ||
* Source code: https://github.com/cran/bnlearn | ||
* Date/Publication: 2024-08-19 17:40:11 UTC | ||
* Number of recursive dependencies: 36 | ||
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Run `revdepcheck::cloud_details(, "bnlearn")` for more info | ||
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</details> | ||
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## In both | ||
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* checking whether package ‘bnlearn’ can be installed ... ERROR | ||
``` | ||
Installation failed. | ||
See ‘/tmp/workdir/bnlearn/new/bnlearn.Rcheck/00install.out’ for details. | ||
``` | ||
## Installation | ||
### Devel | ||
``` | ||
* installing *source* package ‘bnlearn’ ... | ||
** package ‘bnlearn’ successfully unpacked and MD5 sums checked | ||
** using staged installation | ||
** libs | ||
using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ | ||
gcc -std=gnu17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arcs/arcs2amat.c -o arcs/arcs2amat.o | ||
gcc -std=gnu17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arcs/arcs2elist.c -o arcs/arcs2elist.o | ||
gcc -std=gnu17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arcs/bind.c -o arcs/bind.o | ||
gcc -std=gnu17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arcs/filter.arcs.c -o arcs/filter.arcs.o | ||
gcc -std=gnu17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arcs/hash.c -o arcs/hash.o | ||
... | ||
*** installing help indices | ||
** building package indices | ||
** testing if installed package can be loaded from temporary location | ||
Error: package or namespace load failed for ‘bnlearn’ in dyn.load(file, DLLpath = DLLpath, ...): | ||
unable to load shared object '/tmp/workdir/bnlearn/new/bnlearn.Rcheck/00LOCK-bnlearn/00new/bnlearn/libs/bnlearn.so': | ||
/tmp/workdir/bnlearn/new/bnlearn.Rcheck/00LOCK-bnlearn/00new/bnlearn/libs/bnlearn.so: undefined symbol: allocLang | ||
Error: loading failed | ||
Execution halted | ||
ERROR: loading failed | ||
* removing ‘/tmp/workdir/bnlearn/new/bnlearn.Rcheck/bnlearn’ | ||
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``` | ||
### CRAN | ||
``` | ||
* installing *source* package ‘bnlearn’ ... | ||
** package ‘bnlearn’ successfully unpacked and MD5 sums checked | ||
** using staged installation | ||
** libs | ||
using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ | ||
gcc -std=gnu17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arcs/arcs2amat.c -o arcs/arcs2amat.o | ||
gcc -std=gnu17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arcs/arcs2elist.c -o arcs/arcs2elist.o | ||
gcc -std=gnu17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arcs/bind.c -o arcs/bind.o | ||
gcc -std=gnu17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arcs/filter.arcs.c -o arcs/filter.arcs.o | ||
gcc -std=gnu17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arcs/hash.c -o arcs/hash.o | ||
... | ||
*** installing help indices | ||
** building package indices | ||
** testing if installed package can be loaded from temporary location | ||
Error: package or namespace load failed for ‘bnlearn’ in dyn.load(file, DLLpath = DLLpath, ...): | ||
unable to load shared object '/tmp/workdir/bnlearn/old/bnlearn.Rcheck/00LOCK-bnlearn/00new/bnlearn/libs/bnlearn.so': | ||
/tmp/workdir/bnlearn/old/bnlearn.Rcheck/00LOCK-bnlearn/00new/bnlearn/libs/bnlearn.so: undefined symbol: allocLang | ||
Error: loading failed | ||
Execution halted | ||
ERROR: loading failed | ||
* removing ‘/tmp/workdir/bnlearn/old/bnlearn.Rcheck/bnlearn’ | ||
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``` | ||
# datapack | ||
<details> | ||
* Version: 1.4.1 | ||
* GitHub: https://github.com/ropensci/datapack | ||
* Source code: https://github.com/cran/datapack | ||
* Date/Publication: 2022-06-10 19:40:01 UTC | ||
* Number of recursive dependencies: 68 | ||
Run `revdepcheck::cloud_details(, "datapack")` for more info | ||
</details> | ||
## In both | ||
* checking whether package ‘datapack’ can be installed ... ERROR | ||
``` | ||
Installation failed. | ||
See ‘/tmp/workdir/datapack/new/datapack.Rcheck/00install.out’ for details. | ||
``` | ||
## Installation | ||
### Devel | ||
``` | ||
* installing *source* package ‘datapack’ ... | ||
** package ‘datapack’ successfully unpacked and MD5 sums checked | ||
** using staged installation | ||
** R | ||
** inst | ||
** byte-compile and prepare package for lazy loading | ||
Error in dyn.load(file, DLLpath = DLLpath, ...) : | ||
unable to load shared object '/opt/R/4.4.0/lib/R/site-library/redland/libs/redland.so': | ||
librdf.so.0: cannot open shared object file: No such file or directory | ||
Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load | ||
Execution halted | ||
ERROR: lazy loading failed for package ‘datapack’ | ||
* removing ‘/tmp/workdir/datapack/new/datapack.Rcheck/datapack’ | ||
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``` | ||
### CRAN | ||
``` | ||
* installing *source* package ‘datapack’ ... | ||
** package ‘datapack’ successfully unpacked and MD5 sums checked | ||
** using staged installation | ||
** R | ||
** inst | ||
** byte-compile and prepare package for lazy loading | ||
Error in dyn.load(file, DLLpath = DLLpath, ...) : | ||
unable to load shared object '/opt/R/4.4.0/lib/R/site-library/redland/libs/redland.so': | ||
librdf.so.0: cannot open shared object file: No such file or directory | ||
Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load | ||
Execution halted | ||
ERROR: lazy loading failed for package ‘datapack’ | ||
* removing ‘/tmp/workdir/datapack/old/datapack.Rcheck/datapack’ | ||
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``` | ||
# streamDAG | ||
<details> | ||
* Version: 1.5 | ||
* GitHub: NA | ||
* Source code: https://github.com/cran/streamDAG | ||
* Date/Publication: 2023-10-06 18:50:02 UTC | ||
* Number of recursive dependencies: 132 | ||
Run `revdepcheck::cloud_details(, "streamDAG")` for more info | ||
</details> | ||
## Error before installation | ||
### Devel | ||
``` | ||
* using log directory ‘/tmp/workdir/streamDAG/new/streamDAG.Rcheck’ | ||
* using R version 4.4.0 (2024-04-24) | ||
* using platform: x86_64-pc-linux-gnu | ||
* R was compiled by | ||
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 | ||
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 | ||
* running under: Ubuntu 22.04.4 LTS | ||
* using session charset: UTF-8 | ||
* using option ‘--no-manual’ | ||
* checking for file ‘streamDAG/DESCRIPTION’ ... OK | ||
* this is package ‘streamDAG’ version ‘1.5’ | ||
* checking package namespace information ... OK | ||
* checking package dependencies ... ERROR | ||
Package required but not available: ‘asbio’ | ||
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ | ||
manual. | ||
* DONE | ||
Status: 1 ERROR | ||
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``` | ||
### CRAN | ||
``` | ||
* using log directory ‘/tmp/workdir/streamDAG/old/streamDAG.Rcheck’ | ||
* using R version 4.4.0 (2024-04-24) | ||
* using platform: x86_64-pc-linux-gnu | ||
* R was compiled by | ||
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 | ||
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 | ||
* running under: Ubuntu 22.04.4 LTS | ||
* using session charset: UTF-8 | ||
* using option ‘--no-manual’ | ||
* checking for file ‘streamDAG/DESCRIPTION’ ... OK | ||
* this is package ‘streamDAG’ version ‘1.5’ | ||
* checking package namespace information ... OK | ||
* checking package dependencies ... ERROR | ||
Package required but not available: ‘asbio’ | ||
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ | ||
manual. | ||
* DONE | ||
Status: 1 ERROR | ||
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``` | ||
*Wow, no problems at all. :)* |
Oops, something went wrong.