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krlmlr committed Dec 2, 2024
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18 changes: 5 additions & 13 deletions revdep/README.md
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# Revdeps

## Failed to check (3)

|package |version |error |warning |note |
|:---------|:-------|:-----|:-------|:----|
|bnlearn |5.0.1 |1 | | |
|datapack |1.4.1 |1 | | |
|streamDAG |? | | | |

## New problems (3)

|package |version |error |warning |note |
|:---------|:-------|:------|:-------|:----|
|[manynet](problems.md#manynet)|1.2.6 |__+1__ | |3 |
|[simcausal](problems.md#simcausal)|0.5.6 |__+1__ |1 | |
|[skynet](problems.md#skynet)|1.4.3 |__+1__ | |1 |
|package |version |error |warning |note |
|:----------|:-------|:------|:-------|:------|
|[drake](problems.md#drake)|7.13.10 |__+1__ | | |
|[sfnetworks](problems.md#sfnetworks)|0.6.4 |__+2__ | |__+1__ |
|[targets](problems.md#targets)|1.9.0 |__+1__ | |2 |

19 changes: 8 additions & 11 deletions revdep/cran.md
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## revdepcheck results

We checked 7 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
We checked 3 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.

* We saw 3 new problems
* We failed to check 3 packages
* We failed to check 0 packages

Issues with CRAN packages are summarised below.

### New problems
(This reports the first line of each new failure)

* manynet
checking tests ... ERROR
* drake
checking examples ... ERROR

* simcausal
* sfnetworks
checking tests ... ERROR
checking running R code from vignettes ... ERROR
checking re-building of vignette outputs ... NOTE

* skynet
* targets
checking tests ... ERROR

### Failed to check

* bnlearn (NA)
* datapack (NA)
* streamDAG (NA)
213 changes: 1 addition & 212 deletions revdep/failures.md
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# bnlearn

<details>

* Version: 5.0.1
* GitHub: NA
* Source code: https://github.com/cran/bnlearn
* Date/Publication: 2024-08-19 17:40:11 UTC
* Number of recursive dependencies: 36

Run `revdepcheck::cloud_details(, "bnlearn")` for more info

</details>

## In both

* checking whether package ‘bnlearn’ can be installed ... ERROR
```
Installation failed.
See ‘/tmp/workdir/bnlearn/new/bnlearn.Rcheck/00install.out’ for details.
```
## Installation
### Devel
```
* installing *source* package ‘bnlearn’ ...
** package ‘bnlearn’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
gcc -std=gnu17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arcs/arcs2amat.c -o arcs/arcs2amat.o
gcc -std=gnu17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arcs/arcs2elist.c -o arcs/arcs2elist.o
gcc -std=gnu17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arcs/bind.c -o arcs/bind.o
gcc -std=gnu17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arcs/filter.arcs.c -o arcs/filter.arcs.o
gcc -std=gnu17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arcs/hash.c -o arcs/hash.o
...
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘bnlearn’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/tmp/workdir/bnlearn/new/bnlearn.Rcheck/00LOCK-bnlearn/00new/bnlearn/libs/bnlearn.so':
/tmp/workdir/bnlearn/new/bnlearn.Rcheck/00LOCK-bnlearn/00new/bnlearn/libs/bnlearn.so: undefined symbol: allocLang
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/tmp/workdir/bnlearn/new/bnlearn.Rcheck/bnlearn’


```
### CRAN
```
* installing *source* package ‘bnlearn’ ...
** package ‘bnlearn’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
gcc -std=gnu17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arcs/arcs2amat.c -o arcs/arcs2amat.o
gcc -std=gnu17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arcs/arcs2elist.c -o arcs/arcs2elist.o
gcc -std=gnu17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arcs/bind.c -o arcs/bind.o
gcc -std=gnu17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arcs/filter.arcs.c -o arcs/filter.arcs.o
gcc -std=gnu17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arcs/hash.c -o arcs/hash.o
...
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘bnlearn’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/tmp/workdir/bnlearn/old/bnlearn.Rcheck/00LOCK-bnlearn/00new/bnlearn/libs/bnlearn.so':
/tmp/workdir/bnlearn/old/bnlearn.Rcheck/00LOCK-bnlearn/00new/bnlearn/libs/bnlearn.so: undefined symbol: allocLang
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/tmp/workdir/bnlearn/old/bnlearn.Rcheck/bnlearn’


```
# datapack
<details>
* Version: 1.4.1
* GitHub: https://github.com/ropensci/datapack
* Source code: https://github.com/cran/datapack
* Date/Publication: 2022-06-10 19:40:01 UTC
* Number of recursive dependencies: 68
Run `revdepcheck::cloud_details(, "datapack")` for more info
</details>
## In both
* checking whether package ‘datapack’ can be installed ... ERROR
```
Installation failed.
See ‘/tmp/workdir/datapack/new/datapack.Rcheck/00install.out’ for details.
```
## Installation
### Devel
```
* installing *source* package ‘datapack’ ...
** package ‘datapack’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '/opt/R/4.4.0/lib/R/site-library/redland/libs/redland.so':
librdf.so.0: cannot open shared object file: No such file or directory
Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
ERROR: lazy loading failed for package ‘datapack’
* removing ‘/tmp/workdir/datapack/new/datapack.Rcheck/datapack’


```
### CRAN
```
* installing *source* package ‘datapack’ ...
** package ‘datapack’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '/opt/R/4.4.0/lib/R/site-library/redland/libs/redland.so':
librdf.so.0: cannot open shared object file: No such file or directory
Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
ERROR: lazy loading failed for package ‘datapack’
* removing ‘/tmp/workdir/datapack/old/datapack.Rcheck/datapack’


```
# streamDAG
<details>
* Version: 1.5
* GitHub: NA
* Source code: https://github.com/cran/streamDAG
* Date/Publication: 2023-10-06 18:50:02 UTC
* Number of recursive dependencies: 132
Run `revdepcheck::cloud_details(, "streamDAG")` for more info
</details>
## Error before installation
### Devel
```
* using log directory ‘/tmp/workdir/streamDAG/new/streamDAG.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘streamDAG/DESCRIPTION’ ... OK
* this is package ‘streamDAG’ version ‘1.5’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘asbio’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR





```
### CRAN
```
* using log directory ‘/tmp/workdir/streamDAG/old/streamDAG.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘streamDAG/DESCRIPTION’ ... OK
* this is package ‘streamDAG’ version ‘1.5’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘asbio’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR





```
*Wow, no problems at all. :)*
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