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@idekerlab

UC, San Diego Trey Ideker Lab

Bioinformatics software projects developed by UCSD Trey Ideker lab

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  1. DCell DCell Public

    DCell browser and gene deletion simulator

    JavaScript 122 34

  2. hiview hiview Public

    HiView: the universal viewer for hierarchical data

    JavaScript 16 7

  3. vizbi-2015 vizbi-2015 Public

    Sample data and notebooks for VIZBI 2015 tutorial session

    5 12

  4. Network_Evaluation_Tools Network_Evaluation_Tools Public

    Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.

    Jupyter Notebook 32 19

  5. pyNBS pyNBS Public

    Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)

    Jupyter Notebook 38 22

Repositories

Showing 10 of 177 repositories
  • open-cyweb Public
    idekerlab/open-cyweb’s past year of commit activity
    Java 0 BSD-3-Clause 0 0 0 Updated Jan 25, 2025
  • cellmaps_coembedding Public
    idekerlab/cellmaps_coembedding’s past year of commit activity
    Python 0 MIT 1 1 0 Updated Jan 24, 2025
  • cellmaps_vnn Public
    idekerlab/cellmaps_vnn’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 24, 2025
  • cdcytojslayout Public
    idekerlab/cdcytojslayout’s past year of commit activity
    JavaScript 0 0 0 0 Updated Jan 22, 2025
  • networkx_cyweb_analyzer Public
    idekerlab/networkx_cyweb_analyzer’s past year of commit activity
    Python 0 0 0 0 Updated Jan 17, 2025
  • test_cyweb_service_app Public
    idekerlab/test_cyweb_service_app’s past year of commit activity
    Python 1 0 0 0 Updated Jan 17, 2025
  • network-viewer Public
    idekerlab/network-viewer’s past year of commit activity
    TypeScript 2 1 0 8 Updated Jan 16, 2025
  • G2PT Public
    idekerlab/G2PT’s past year of commit activity
    Python 8 2 1 0 Updated Jan 16, 2025
  • cansrmapp Public
    idekerlab/cansrmapp’s past year of commit activity
    Python 0 0 0 0 Updated Jan 13, 2025
  • cookiecutter-musicpypackage Public
    idekerlab/cookiecutter-musicpypackage’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Jan 6, 2025
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