pyproject and dotfiles cleanup

hydrationdynamics · Jan 12, 2024 · 75894a7 · 75894a7
1 parent 9124006
commit 75894a7
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Showing 8 changed files with 1,156 additions and 67 deletions.
diff --git a/.cookiecutter.json b/.cookiecutter.json
diff --git a/.flake8 b/.flake8
diff --git a/.pydocstyle b/.pydocstyle
diff --git a/.readthedocs.yml b/.readthedocs.yml
@@ -1,8 +1,8 @@
 version: 2
 build:
-  os: ubuntu-20.04
+  os: ubuntu-22.04
   tools:
-    python: "3.10"
+    python: "3.12"
 sphinx:
   configuration: docs/conf.py
 formats: all

diff --git a/docs/requirements.txt b/docs/requirements.txt
@@ -1,4 +1,7 @@
 furo
+linkify-it-py
+numpy
 sphinx
+sphinx-autobuild
+sphinx-click
 myst_parser
-linkify-it-py
diff --git a/noxfile.py b/noxfile.py
@@ -41,7 +41,8 @@ def precommit(session: nox.Session) -> None:
 def safety(session: nox.Session) -> None:
     """Scan dependencies for insecure packages."""
     session.run_always("pdm", "install", "-G", "safety", external=True)
-    session.run_always("pdm", "export", "-o", "requirements.txt", "--without-hashes")
+    session.run_always("pdm", "export", "-o", "requirements.txt",
+                       "--without-hashes", external=True)
     session.run("safety", "check", "--full-report")
     Path("requirements.txt").unlink()
 

diff --git a/pdm.lock b/pdm.lock
diff --git a/pyproject.toml b/pyproject.toml
@@ -45,7 +45,34 @@ keywords = [
     "high-performance",
 ]
 
-[project.dev-dependencies]
+[project.optional-dependencies]
+analysis = [
+    "typer>=0.9.0",
+    "scipy>=1.11.4",
+    "seaborn>=0.13.1",
+]
+[tool.coverage.paths]
+source = ["src", "*/site-packages"]
+tests = ["tests", "*/tests"]
+
+[tool.coverage.report]
+show_missing = true
+
+[tool.coverage.run]
+source = ["flardl"]
+concurrency = ["multiprocessing"]
+sigterm = true
+parallel = true
+relative_files = true
+
+[tool.mypy]
+warn_unreachable = true
+pretty = true
+show_column_numbers = true
+show_error_codes = true
+show_error_context = true
+
+[tool.pdm.dev-dependencies]
 tests = [
     "pygments>=2.16.1",
     "hypothesis>=6.88.3",
@@ -82,33 +109,6 @@ coverage = [
     "coverage>=7.4.0",
 ]
 
-[project.optional-dependencies]
-analysis = [
-    "typer>=0.9.0",
-    "scipy>=1.11.4",
-    "seaborn>=0.13.1",
-]
-[tool.coverage.paths]
-source = ["src", "*/site-packages"]
-tests = ["tests", "*/tests"]
-
-[tool.coverage.report]
-show_missing = true
-
-[tool.coverage.run]
-source = ["flardl"]
-concurrency = ["multiprocessing"]
-sigterm = true
-parallel = true
-relative_files = true
-
-[tool.mypy]
-warn_unreachable = true
-pretty = true
-show_column_numbers = true
-show_error_codes = true
-show_error_context = true
-
 [tool.pytest.ini_options]
 addopts = ["-x"]
 
@@ -167,11 +167,6 @@ max-complexity = 10
 [tool.ruff.pydocstyle]
 convention = 'google'
 
-
-[tool.pdm.dev-dependencies]
-dev = [
-    "ruff>=0.1.6",
-]
 [build-system]
 requires = ["pdm-backend"]
 build-backend = "pdm.backend"