Extended mdocfile

Extended mdocfile is an adaptation of mdocfile Python package (from Alister) for working with SerialEM mdoc files. These extended mdocfiles are regular mdocs supplemented with extra columns of SpecimenShift, EucentricOffset and CtfFind values (obtained with PACETomo DoCtffind function).

All credits of the original library to Alister! Thanks for making our lifes easier! #TeamTomo

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Quickstart

mdocfile.read() will return the contents of an mdoc file as a pandas dataframe.

import mdocfile

df = mdocfile.read('my_mdoc_file.mdoc')

Installation

pip:

pip install git+https://github.com/hvdrosa/extended_mdocfile.git