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hubmapconsortium · Dec 18, 2024 · 051c22f · 051c22f
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diff --git a/NOTES.md b/NOTES.md
@@ -38,11 +38,11 @@ Release Notes
 |Placenta|v1.3|NA|
 |Prostate|v1.2|revise for October 1, 2024|
 |Skeleton|v1.3|revise for October 1, 2024|
-|Skin|v1.4|Revise for October 1, 2024|
+|Skin|v1.4|December 15, 2024|
 |Small_intestine|v1.2|revise for October 1, 2024|
 |Spinal_Cord|v1.1|December 15, 2024|
-|Spleen|v1.4|revise for April 1, 2024|
-|Thymus|v1.5|revise for April 1, 2024|
+|Spleen|v1.4|December 15, 2024|
+|Thymus|v1.5|December 15, 2024|
 |Trachea|v1.1|revise for October 1|
 |Ureter|NA|revise for April 2023|
 |Urinary_bladder|v1.1|revise for April 2024|

diff --git a/docs/Anatomical_Systems/README.md b/docs/Anatomical_Systems/README.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Anatomical_Systems (2024-12-11)
+ASCT+B Validation Reports for Anatomical_Systems (2024-12-18)
 =============================================================
 
 Table of contents

diff --git a/docs/Anatomical_Systems/assets/ccf_Anatomical_Systems_graph.pdf b/docs/Anatomical_Systems/assets/ccf_Anatomical_Systems_graph.pdf
diff --git a/docs/Anatomical_Systems/graph.md b/docs/Anatomical_Systems/graph.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Anatomical_Systems (2024-12-11)
+ASCT+B Validation Reports for Anatomical_Systems (2024-12-18)
 =============================================================
 
 # ASCT+B as Graph

diff --git a/docs/Blood/README.md b/docs/Blood/README.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Blood (2024-12-11)
+ASCT+B Validation Reports for Blood (2024-12-18)
 ================================================
 
 Table of contents

diff --git a/docs/Blood/assets/ccf_Blood_graph.pdf b/docs/Blood/assets/ccf_Blood_graph.pdf
diff --git a/docs/Blood/graph.md b/docs/Blood/graph.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Blood (2024-12-11)
+ASCT+B Validation Reports for Blood (2024-12-18)
 ================================================
 
 # ASCT+B as Graph

diff --git a/docs/Blood_vasculature/README.md b/docs/Blood_vasculature/README.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Blood_vasculature (2024-12-11)
+ASCT+B Validation Reports for Blood_vasculature (2024-12-18)
 ============================================================
 
 Table of contents

diff --git a/docs/Blood_vasculature/assets/ccf_Blood_vasculature_graph.pdf b/docs/Blood_vasculature/assets/ccf_Blood_vasculature_graph.pdf
diff --git a/docs/Blood_vasculature/graph.md b/docs/Blood_vasculature/graph.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Blood_vasculature (2024-12-11)
+ASCT+B Validation Reports for Blood_vasculature (2024-12-18)
 ============================================================
 
 # ASCT+B as Graph

diff --git a/docs/Bone-Marrow/README.md b/docs/Bone-Marrow/README.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Bone-Marrow (2024-12-11)
+ASCT+B Validation Reports for Bone-Marrow (2024-12-18)
 ======================================================
 
 Table of contents

diff --git a/docs/Bone-Marrow/assets/ccf_Bone-Marrow_graph.pdf b/docs/Bone-Marrow/assets/ccf_Bone-Marrow_graph.pdf
diff --git a/docs/Bone-Marrow/graph.md b/docs/Bone-Marrow/graph.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Bone-Marrow (2024-12-11)
+ASCT+B Validation Reports for Bone-Marrow (2024-12-18)
 ======================================================
 
 # ASCT+B as Graph

diff --git a/docs/Brain/README.md b/docs/Brain/README.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Brain (2024-12-11)
+ASCT+B Validation Reports for Brain (2024-12-18)
 ================================================
 
 Table of contents

diff --git a/docs/Brain/assets/ccf_Brain_graph.pdf b/docs/Brain/assets/ccf_Brain_graph.pdf
diff --git a/docs/Brain/graph.md b/docs/Brain/graph.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Brain (2024-12-11)
+ASCT+B Validation Reports for Brain (2024-12-18)
 ================================================
 
 # ASCT+B as Graph

diff --git a/docs/Eye/README.md b/docs/Eye/README.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Eye (2024-12-11)
+ASCT+B Validation Reports for Eye (2024-12-18)
 ==============================================
 
 Table of contents
@@ -62,8 +62,6 @@ This report provides a list of blank spreadsheet cells that often mean no ontolo
 
 You can find more information on the [New CL terms](#new-cl-terms) or [New UBERON terms](#new-uberon-terms) reports.  
 
-1. No term id was found for the name/label _conjuctival epithelium_ in the following 1 row _[15](https://docs.google.com/spreadsheets/d/1tNNPZXL0ycw5gNksDUKHZJpRkKgRdVAUh9AZ6ohpgOA/edit#gid=695483621&range=15:15)_.
-
 1. No term id was found for the name/label _limbal stem cells_ in the following 1 row _[28](https://docs.google.com/spreadsheets/d/1tNNPZXL0ycw5gNksDUKHZJpRkKgRdVAUh9AZ6ohpgOA/edit#gid=695483621&range=28:28)_.
 
 1. No term id was found for the name/label _Inner cortex_ in the following 1 row _[36](https://docs.google.com/spreadsheets/d/1tNNPZXL0ycw5gNksDUKHZJpRkKgRdVAUh9AZ6ohpgOA/edit#gid=695483621&range=36:36)_.

diff --git a/docs/Eye/assets/ccf_Eye_graph.pdf b/docs/Eye/assets/ccf_Eye_graph.pdf
diff --git a/docs/Eye/assets/ccf_Eye_graph.png b/docs/Eye/assets/ccf_Eye_graph.png
diff --git a/docs/Eye/graph.md b/docs/Eye/graph.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Eye (2024-12-11)
+ASCT+B Validation Reports for Eye (2024-12-18)
 ==============================================
 
 # ASCT+B as Graph

diff --git a/docs/Eye/logs_dict.json b/docs/Eye/logs_dict.json
@@ -1,11 +1,5 @@
 {
   "no_valid_id": [
-    {
-      "id": "",
-      "label": "conjuctival epithelium",
-      "user_label": "conjuctival epithelium",
-      "row_number": 15
-    },
     {
       "id": "",
       "label": "limbal stem cell",

diff --git a/docs/Eye/new_uberon_terms_Eye.tsv b/docs/Eye/new_uberon_terms_Eye.tsv
@@ -1,5 +1,4 @@
 Upper AS	Upper AS/label	Upper AS/ID	AS Name	References/ID	References/DOI
-conjunctiva	conjunctiva	UBERON:0001811	conjuctival epithelium		
 cortex	lens cortex	UBERON:0000389	Inner cortex		
 cortex	lens cortex	UBERON:0000389	Outer cortex		
 lens Cortex	lens Cortex	UBERON:0000389	Outer cortex	HTTPS:DOIORG101167IOVS1518117	
diff --git a/docs/Fallopian_tube/README.md b/docs/Fallopian_tube/README.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Fallopian_tube (2024-12-11)
+ASCT+B Validation Reports for Fallopian_tube (2024-12-18)
 =========================================================
 
 Table of contents
@@ -52,7 +52,7 @@ If the term's name/label and the name/label given by SME are too different, plea
 
 If the name/label in the ontology contains *obsolete*, please look into OLS, clicking on the term ID, for its replacement.  
 
-1. The term _[UBERON:8410010](http://purl.obolibrary.org/obo/UBERON_8410010)_ has a different name/label in the source ontology in the following 3 rows _[116](https://docs.google.com/spreadsheets/d/1yCfVQmd3-R8wEN6qolpBT3w7hN2ug6pHyoxnM4i-sws/edit#gid=991519552&range=116:116)_, _[127](https://docs.google.com/spreadsheets/d/1yCfVQmd3-R8wEN6qolpBT3w7hN2ug6pHyoxnM4i-sws/edit#gid=991519552&range=127:127)_, _[128](https://docs.google.com/spreadsheets/d/1yCfVQmd3-R8wEN6qolpBT3w7hN2ug6pHyoxnM4i-sws/edit#gid=991519552&range=128:128)_. The name/label in the **ASCT+B table** is _fimbria of uterine tube_ and the one in the **ontology** is _fimbria of fallopian tube_. For reference, the given name/label **by SMEs** is _fimbria of Fallopian tube_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.
+- No issues found.
 
 
 ## Blank ontology ID

diff --git a/docs/Fallopian_tube/assets/ccf_Fallopian_tube_graph.pdf b/docs/Fallopian_tube/assets/ccf_Fallopian_tube_graph.pdf
diff --git a/docs/Fallopian_tube/graph.md b/docs/Fallopian_tube/graph.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Fallopian_tube (2024-12-11)
+ASCT+B Validation Reports for Fallopian_tube (2024-12-18)
 =========================================================
 
 # ASCT+B as Graph

diff --git a/docs/Fallopian_tube/logs_dict.json b/docs/Fallopian_tube/logs_dict.json
@@ -1172,29 +1172,7 @@
     }
   ],
   "no_found_id": [],
-  "diff_label": [
-    {
-      "id": "UBERON:8410010",
-      "label": "fimbria of fallopian tube",
-      "asct_label": "fimbria of uterine tube",
-      "user_label": "fimbria of Fallopian tube",
-      "row_number": 116
-    },
-    {
-      "id": "UBERON:8410010",
-      "label": "fimbria of fallopian tube",
-      "asct_label": "fimbria of uterine tube",
-      "user_label": "fimbria of Fallopian tube",
-      "row_number": 127
-    },
-    {
-      "id": "UBERON:8410010",
-      "label": "fimbria of fallopian tube",
-      "asct_label": "fimbria of uterine tube",
-      "user_label": "fimbria of Fallopian tube",
-      "row_number": 128
-    }
-  ],
+  "diff_label": [],
   "no_parent": [
     {
       "id": "",

diff --git a/docs/Fallopian_tube/new_uberon_terms_Fallopian_tube.tsv b/docs/Fallopian_tube/new_uberon_terms_Fallopian_tube.tsv
@@ -79,7 +79,7 @@ wall of Fallopian tube ampulla			muscle layer of oviduct ampulla
 muscle layer of oviduct ampulla			Inner muscle layer of Fallopian tube ampulla		
 muscle layer of oviduct ampulla			Middle muscle layer of Fallopian tube ampulla		
 muscle layer of oviduct ampulla			Outer muscle layer of Fallopian tube ampulla		
-fimbria of Fallopian tube	fimbria of uterine tube	UBERON:8410010	mucosa of Fallopian tube fimbria	PMID:22911892	
+fimbria of Fallopian tube	fimbria of fallopian tube	UBERON:8410010	mucosa of Fallopian tube fimbria	PMID:22911892	
 infundibulum of Fallopian tube	uterine tube infundibulum	UBERON:0003984	plica of Fallopian tube infundibulum	PMID:22911892	
 plica of Fallopian tube infundibulum			mucosa of Fallopian tube infundibulum	PMID:22911892	
 wall of Fallopian tube infundibulum			muscle layer of oviduct infundibulum		
@@ -98,8 +98,8 @@ ampulla of Fallopian tube	ampulla of fallopian tube	UBERON:0012648	plica of Fall
 plica of Fallopian tube ampulla			mucosa of Fallopian tube ampulla		
 ampulla of Fallopian tube	ampulla of fallopian tube	UBERON:0012648	plica of Fallopian tube ampulla	HTTPS:DOIORG101016JCELREP2021108978	
 plica of Fallopian tube ampulla			mucosa of Fallopian tube ampulla	HTTPS:DOIORG101016JCELREP2021108978	
-fimbria of Fallopian tube	fimbria of uterine tube	UBERON:8410010	mucosa of Fallopian tube fimbria		
-fimbria of Fallopian tube	fimbria of uterine tube	UBERON:8410010	mucosa of Fallopian tube fimbria	HTTPS:DOIORG101016JCELREP2021108978	
+fimbria of Fallopian tube	fimbria of fallopian tube	UBERON:8410010	mucosa of Fallopian tube fimbria		
+fimbria of Fallopian tube	fimbria of fallopian tube	UBERON:8410010	mucosa of Fallopian tube fimbria	HTTPS:DOIORG101016JCELREP2021108978	
 infundibulum of Fallopian tube	uterine tube infundibulum	UBERON:0003984	plica of Fallopian tube infundibulum		
 plica of Fallopian tube infundibulum			mucosa of Fallopian tube infundibulum		
 infundibulum of Fallopian tube	uterine tube infundibulum	UBERON:0003984	plica of Fallopian tube infundibulum	HTTPS:DOIORG101016JCELREP2021108978	

diff --git a/docs/Heart/README.md b/docs/Heart/README.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Heart (2024-12-11)
+ASCT+B Validation Reports for Heart (2024-12-18)
 ================================================
 
 Table of contents

diff --git a/docs/Heart/assets/ccf_Heart_graph.pdf b/docs/Heart/assets/ccf_Heart_graph.pdf
diff --git a/docs/Heart/graph.md b/docs/Heart/graph.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Heart (2024-12-11)
+ASCT+B Validation Reports for Heart (2024-12-18)
 ================================================
 
 # ASCT+B as Graph

diff --git a/docs/Kidney/README.md b/docs/Kidney/README.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Kidney (2024-12-11)
+ASCT+B Validation Reports for Kidney (2024-12-18)
 =================================================
 
 Table of contents
@@ -52,7 +52,7 @@ If the term's name/label and the name/label given by SME are too different, plea
 
 If the name/label in the ontology contains *obsolete*, please look into OLS, clicking on the term ID, for its replacement.  
 
-1. The term _[CL:1000454](http://purl.obolibrary.org/obo/CL_1000454)_ has a different name/label in the source ontology in the following 1 row _[52](https://docs.google.com/spreadsheets/d/1CS-Tplkosorg8q6Ci8oALTvt9ufvEyDmCNAI2LsKM_g/edit#gid=949267305&range=52:52)_. The name/label in the **ASCT+B table** is _kidney collecting duct epithelial cell _ and the one in the **ontology** is _kidney collecting duct epithelial cell_. For reference, the given name/label **by SMEs** is _kidney collecting duct epithelial cell _. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.
+- No issues found.
 
 
 ## Blank ontology ID

diff --git a/docs/Kidney/assets/ccf_Kidney_graph.pdf b/docs/Kidney/assets/ccf_Kidney_graph.pdf
diff --git a/docs/Kidney/graph.md b/docs/Kidney/graph.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Kidney (2024-12-11)
+ASCT+B Validation Reports for Kidney (2024-12-18)
 =================================================
 
 # ASCT+B as Graph

diff --git a/docs/Kidney/logs_dict.json b/docs/Kidney/logs_dict.json
@@ -32,14 +32,6 @@
     }
   ],
   "no_found_id": [],
-  "diff_label": [
-    {
-      "id": "CL:1000454",
-      "label": "kidney collecting duct epithelial cell",
-      "asct_label": "kidney collecting duct epithelial cell ",
-      "user_label": "kidney collecting duct epithelial cell ",
-      "row_number": 52
-    }
-  ],
+  "diff_label": [],
   "no_parent": []
 }
diff --git a/docs/Knee/README.md b/docs/Knee/README.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Knee (2024-12-11)
+ASCT+B Validation Reports for Knee (2024-12-18)
 ===============================================
 
 Table of contents

diff --git a/docs/Knee/assets/ccf_Knee_graph.pdf b/docs/Knee/assets/ccf_Knee_graph.pdf
diff --git a/docs/Knee/graph.md b/docs/Knee/graph.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Knee (2024-12-11)
+ASCT+B Validation Reports for Knee (2024-12-18)
 ===============================================
 
 # ASCT+B as Graph