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Update dependencies (backend) #5642

Merged
merged 15 commits into from
May 23, 2023
Merged

Update dependencies (backend) #5642

merged 15 commits into from
May 23, 2023

Commits on May 22, 2023

  1. Update backend dependencies 

    `requirements.txt` now has sections. These sections are intended to make
it easier to know why a dependency is added.

Some dependency updates required changes to the backend.

Of note, flask_script is no longer supported and flask includes its own
cli. Some effort was taken to ensure that existing scripts will still
work, but users should update their scripts as soon as possible.

* Added
 * blinker
 * charset-normalizer
 * mypy-extensions
 * numpy
 * packaging
 * pathspec
 * platformdirs
 * pytz-deprecation-shim
 * typing_extensions
 * tzdata
 * tzlocal
 * zipp
 * zope.event
 * zope.interface
* Removed
 * Flask-Script
 * Unidecode
 * appdirs
 * attrs
 * chardet
 * entrypoints
 * glob2
 * newrelic
 * pyparsing
 * pyproj
 * python-editor
 * toml

Signed-off-by: Taylor Smock <[email protected]>
    @tsmock
    tsmock committed May 22, 2023
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  2. Replace nose with pytest 

    Signed-off-by: Taylor Smock <[email protected]>
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    tsmock committed May 22, 2023
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  3. Switch CI from nosetest to pytest 

    Signed-off-by: Taylor Smock <[email protected]>
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    tsmock committed May 22, 2023
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  4. Add missing __init__.py files to tests 

    Signed-off-by: Taylor Smock <[email protected]>
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    tsmock committed May 22, 2023
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  5. Update python versions used in CI and docker images 

    Signed-off-by: Taylor Smock <[email protected]>
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    tsmock committed May 22, 2023
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  6. Fix gevent warning when run with gunicorn

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    tsmock committed May 22, 2023
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  7. migrations: Make compatible with SQLAlchemy 2.x 

    The primary change required was wrapping direct SQL commands with
sqlalchemy.text (written as "sa.text"). Most of these could be converted
to be not be written as direct SQL commands.

Signed-off-by: Taylor Smock <[email protected]>
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    tsmock committed May 22, 2023
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  8. Update flask calls

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  9. Shapely updates 

    Signed-off-by: Taylor Smock <[email protected]>
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  10. ORM updates 

    This is largely paginate changes, along query methodology updates, and
db execution method updates.

There is also a change in backend/services/organisation_service.py that
fixes a test failure (`datetime.today()` -> `func.now()`).

Signed-off-by: Taylor Smock <[email protected]>
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    tsmock committed May 22, 2023
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  11. Various fixes for test breakage 

    Signed-off-by: Taylor Smock <[email protected]>
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    tsmock committed May 22, 2023
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  12. geojson precision updates 

    Signed-off-by: Taylor Smock <[email protected]>
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    tsmock committed May 22, 2023
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  13. test_project: Add explanation for why the test is flaky 

    Also, add debug output for exception

Signed-off-by: Taylor Smock <[email protected]>
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  14. ORM updates -- fix deprecation warnings shown in tests (and only thos… 

    …e shown by tests)

Signed-off-by: Taylor Smock <[email protected]>
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  15. CI: Set TM_ORG_CODE and TM_ORG_NAME 

    Signed-off-by: Taylor Smock <[email protected]>
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    tsmock committed May 22, 2023
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