Merge branch 'main' into features/818-Module_linalg_replace_factories…

…_array_with_DNDarray_construct_where_possible
helmholtz-analytics · Feb 20, 2024 · 257cdae · 257cdae
2 parents da4ba43 + 3655bd2
commit 257cdae
Show file tree

Hide file tree

Showing 65 changed files with 435 additions and 191 deletions.
diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md
@@ -2,7 +2,6 @@
 <!--- Please address the following points before setting your PR "ready for review".
 --->
 - General:
-    - [ ]  **base branch** must be `main` for new features, latest release branch (e.g. `release/1.3.x`) for bug fixes
     - [ ]  **title** of the PR is suitable to appear in the [Release Notes](https://github.com/helmholtz-analytics/heat/releases/latest)
 - Implementation:
     - [ ] unit tests: all split configurations tested

diff --git a/.github/dependabot.yml b/.github/dependabot.yml
@@ -3,14 +3,14 @@ updates:
   - package-ecosystem: github-actions
     directory: /
     schedule:
-      interval: daily
+      interval: "weekly"
 
   - package-ecosystem: pip
     directory: /doc
     schedule:
-      interval: daily
+      interval: "weekly"
 
   - package-ecosystem: docker
     directory: /heat/core/tests
     schedule:
-      interval: daily
+      interval: "weekly"
diff --git a/.github/issue-branch.yml b/.github/issue-branch.yml
@@ -5,7 +5,6 @@ defaultBranch: 'main'
 
 branches:
   - label: bug
-    name: release/1.3.x
     prefix: bugs/
   - label: enhancement
     prefix: features/

diff --git a/.github/workflows/CIBase.yml b/.github/workflows/CIBase.yml
@@ -5,7 +5,6 @@ on:
     branches:
       - 'main'
       - 'release/**'
-      - 'support/**'
 
 permissions:
   contents: read
@@ -15,7 +14,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Harden Runner
-        uses: step-security/harden-runner@eb238b55efaa70779f274895e782ed17c84f2895 # v2.6.1
+        uses: step-security/harden-runner@63c24ba6bd7ba022e95695ff85de572c04a18142 # v2.7.0
         with:
           egress-policy: audit
 
@@ -24,6 +23,6 @@ jobs:
          curl -s -X POST \
            --fail \
            -F token=${{ secrets.CB_PIPELINE }} \
-           -F "ref=pt20" \
+           -F "ref=heat/base" \
            -F "variables[SHA]=$GITHUB_SHA" \
            https://codebase.helmholtz.cloud/api/v4/projects/7605/trigger/pipeline -o /dev/null
diff --git a/.github/workflows/CISupport.yml b/.github/workflows/CISupport.yml
@@ -0,0 +1,19 @@
+name: Start CI Support Run
+
+on:
+  push:
+    branches:
+      - 'support/**'
+
+jobs:
+  starter:
+    runs-on: ubuntu-latest
+    steps:
+      - name: 'start test'
+        run: |
+         curl -s -X POST \
+           --fail \
+           -F token=${{ secrets.CB_PIPELINE }} \
+           -F "ref=heat/support" \
+           -F "variables[SHA]=$GITHUB_SHA" \
+           https://codebase.helmholtz.cloud/api/v4/projects/7605/trigger/pipeline -o /dev/null
diff --git a/.github/workflows/CommentPR.yml b/.github/workflows/CommentPR.yml
@@ -16,7 +16,7 @@ jobs:
       PR_NR: ${{ steps.step1.outputs.test }}
     steps:
       - name: Harden Runner
-        uses: step-security/harden-runner@eb238b55efaa70779f274895e782ed17c84f2895 # v2.6.1
+        uses: step-security/harden-runner@63c24ba6bd7ba022e95695ff85de572c04a18142 # v2.7.0
         with:
           egress-policy: audit
 
@@ -65,17 +65,17 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Harden Runner
-        uses: step-security/harden-runner@eb238b55efaa70779f274895e782ed17c84f2895 # v2.6.1
+        uses: step-security/harden-runner@63c24ba6bd7ba022e95695ff85de572c04a18142 # v2.7.0
         with:
           egress-policy: audit
 
-      - uses: actions/checkout@f43a0e5ff2bd294095638e18286ca9a3d1956744 # v3.6.0
+      - uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
 
       - name: 'Trigger Workflow'
         run: |
          curl -s -X POST \
            --fail \
            -F token=${{ secrets.CB_PIPELINE }} \
-           -F "ref=pt20" \
+           -F "ref=heat/pr" \
            -F "variables[PR]=${{ needs.upload.outputs.PR_NR }}" \
            https://codebase.helmholtz.cloud/api/v4/projects/7605/trigger/pipeline -o /dev/null
diff --git a/.github/workflows/ReceivePR.yml b/.github/workflows/ReceivePR.yml
@@ -2,24 +2,24 @@ name: Receive PR
 
 on:
   pull_request:
-    paths-ignore:
-      - 'doc/**'
+    paths:
+      - 'heat/**'
 
 jobs:
   build:
-    if: ${{ !startsWith(github.head_ref, 'support/') }}
+    if: ${{ !startsWith(github.head_ref, 'support/') && (github.event.pull_request.draft == false) }}
     runs-on: ubuntu-latest
 
     steps:
       - name: Harden Runner
-        uses: step-security/harden-runner@eb238b55efaa70779f274895e782ed17c84f2895 # v2.6.1
+        uses: step-security/harden-runner@63c24ba6bd7ba022e95695ff85de572c04a18142 # v2.7.0
         with:
           egress-policy: audit
 
-      - uses: actions/checkout@f43a0e5ff2bd294095638e18286ca9a3d1956744 # v3.6.0
+      - uses: actions/checkout@v4.1.1
 
       - name: Use Python
-        uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236 # v4.7.1
+        uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5.0.0
         with:
           python-version: 3.8
           architecture: x64
@@ -41,7 +41,7 @@ jobs:
         run: |
           mkdir -p ./pr
           echo $PR_NUMBER > ./pr/pr_number
-      - uses: actions/upload-artifact@a8a3f3ad30e3422c9c7b888a15615d19a852ae32 # v3.1.3
+      - uses: actions/upload-artifact@5d5d22a31266ced268874388b861e4b58bb5c2f3 # v4.3.1
         with:
           name: pr_number
           path: pr/
diff --git a/.github/workflows/backport.yml b/.github/workflows/backport.yml
@@ -0,0 +1,19 @@
+name: Backport merged pull request
+on:
+  pull_request_target:
+    types: [closed]
+permissions:
+  contents: write # so it can comment
+  pull-requests: write # so it can create pull requests
+jobs:
+  backport:
+    name: Backport pull request
+    runs-on: ubuntu-latest
+    # Don't run on closed unmerged pull requests
+    if: github.event.pull_request.merged
+    steps:
+      - uses: actions/[email protected]
+      - name: Create backport pull requests
+        uses: korthout/backport-action@v2
+        with:
+          merge_commits: 'skip'
diff --git a/.github/workflows/bench_report.yml b/.github/workflows/bench_report.yml
@@ -17,7 +17,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Harden Runner
-        uses: step-security/harden-runner@eb238b55efaa70779f274895e782ed17c84f2895 # v2.6.1
+        uses: step-security/harden-runner@63c24ba6bd7ba022e95695ff85de572c04a18142 # v2.7.0
         with:
           egress-policy: audit
 

diff --git a/.github/workflows/bench_trigger.yml b/.github/workflows/bench_trigger.yml
@@ -12,7 +12,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Harden Runner
-        uses: step-security/harden-runner@eb238b55efaa70779f274895e782ed17c84f2895 # v2.6.1
+        uses: step-security/harden-runner@63c24ba6bd7ba022e95695ff85de572c04a18142 # v2.7.0
         with:
           egress-policy: audit
 
@@ -21,6 +21,8 @@ jobs:
       - name: Trigger benchmarks (PR)
         id: setup_pr
         if: contains(github.event.pull_request.labels.*.name, 'benchmark PR')
+        env:
+          BRANCH: ${{ github.head_ref }}
         run: |
           SHORT_SHA=$(git rev-parse --short ${{ github.event.pull_request.head.sha }})
           curl -s -X POST \
@@ -29,7 +31,7 @@ jobs:
             -F "ref=main" \
             -F "variables[SHA]=${{ github.event.pull_request.head.sha }}" \
             -F "variables[SHORT_SHA]=${SHORT_SHA}" \
-            -F "variables[BRANCH]=${{ github.head_ref }}" \
+            -F "variables[BRANCH]=$BRANCH" \
             -F "variables[PR]=${{ github.event.pull_request.number }}" \
             -F "variables[AUTHOR]=${{ github.event.pull_request.assignee.login }}" \
             https://codebase.helmholtz.cloud/api/v4/projects/7930/trigger/pipeline

diff --git a/.github/workflows/changelog-updater.yml b/.github/workflows/changelog-updater.yml
@@ -14,12 +14,12 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Harden Runner
-        uses: step-security/harden-runner@eb238b55efaa70779f274895e782ed17c84f2895 # v2.6.1
+        uses: step-security/harden-runner@63c24ba6bd7ba022e95695ff85de572c04a18142 # v2.7.0
         with:
           egress-policy: audit
 
       - name: Checkout code
-        uses: actions/checkout@f43a0e5ff2bd294095638e18286ca9a3d1956744 # v3.6.0
+        uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
         with:
           repository: helmholtz-analytics/heat
           ref: ${{ github.event.release.target_commitish }}
@@ -35,7 +35,7 @@ jobs:
           rm newline.txt
           cat CHANGELOG.md
       - name: Commit updated CHANGELOG
-        uses: stefanzweifel/git-auto-commit-action@3ea6ae190baf489ba007f7c92608f33ce20ef04a # v4.16.0
+        uses: stefanzweifel/git-auto-commit-action@8756aa072ef5b4a080af5dc8fef36c5d586e521d # v5.0.0
         with:
           branch: ${{ github.event.release.target_commitish }}
           commit_message: Update CHANGELOG

diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
@@ -24,6 +24,7 @@ jobs:
           - 'torch==1.11.0+cpu torchvision==0.12.0+cpu torchaudio==0.11.0'
           - 'torch==1.12.1+cpu torchvision==0.13.1+cpu torchaudio==0.12.1'
           - 'torch==1.13.1+cpu torchvision==0.14.1+cpu torchaudio==0.13.1'
+          - 'torch==2.0.1 torchvision==0.15.2 torchaudio==2.0.2'
           - 'torch torchvision torchaudio'
         exclude:
           - py-version: '3.10'
@@ -37,18 +38,18 @@ jobs:
     name: Python ${{ matrix.py-version }} with ${{ matrix.pytorch-version }}; options ${{ matrix.install-options }}
     steps:
       - name: Harden Runner
-        uses: step-security/harden-runner@eb238b55efaa70779f274895e782ed17c84f2895 # v2.6.1
+        uses: step-security/harden-runner@63c24ba6bd7ba022e95695ff85de572c04a18142 # v2.7.0
         with:
           egress-policy: audit
 
       - name: Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v4.1.1
       - name: Setup MPI
         uses: mpi4py/[email protected]
         with:
           mpi: ${{ matrix.mpi }}
       - name: Use Python ${{ matrix.py-version }}
-        uses: actions/setup-python@65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236 # v4.7.1
+        uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5.0.0
         with:
           python-version: ${{ matrix.py-version }}
           architecture: x64

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
@@ -41,16 +41,16 @@ jobs:
 
     steps:
       - name: Harden Runner
-        uses: step-security/harden-runner@eb238b55efaa70779f274895e782ed17c84f2895 # v2.6.1
+        uses: step-security/harden-runner@63c24ba6bd7ba022e95695ff85de572c04a18142 # v2.7.0
         with:
           egress-policy: audit
 
       - name: Checkout repository
-        uses: actions/checkout@f43a0e5ff2bd294095638e18286ca9a3d1956744 # v3.6.0
+        uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
 
       # Initializes the CodeQL tools for scanning.
       - name: Initialize CodeQL
-        uses: github/codeql-action/init@305f6546310b9203e892c28c1484e82977f4f63d # v2.22.10
+        uses: github/codeql-action/init@379614612a29c9e28f31f39a59013eb8012a51f0 # v3.24.3
         with:
           languages: ${{ matrix.language }}
           # If you wish to specify custom queries, you can do so here or in a config file.
@@ -60,7 +60,7 @@ jobs:
       # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).
       # If this step fails, then you should remove it and run the build manually (see below)
       - name: Autobuild
-        uses: github/codeql-action/autobuild@305f6546310b9203e892c28c1484e82977f4f63d # v2.22.10
+        uses: github/codeql-action/autobuild@379614612a29c9e28f31f39a59013eb8012a51f0 # v3.24.3
 
       # ℹ️ Command-line programs to run using the OS shell.
       # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
@@ -73,6 +73,6 @@ jobs:
       #   ./location_of_script_within_repo/buildscript.sh
 
       - name: Perform CodeQL Analysis
-        uses: github/codeql-action/analyze@305f6546310b9203e892c28c1484e82977f4f63d # v2.22.10
+        uses: github/codeql-action/analyze@379614612a29c9e28f31f39a59013eb8012a51f0 # v3.24.3
         with:
           category: "/language:${{matrix.language}}"
diff --git a/.github/workflows/codesee-arch-diagram.yml b/.github/workflows/codesee-arch-diagram.yml
@@ -18,7 +18,7 @@ jobs:
     name: Analyze the repo with CodeSee
     steps:
       - name: Harden Runner
-        uses: step-security/harden-runner@eb238b55efaa70779f274895e782ed17c84f2895 # v2.6.1
+        uses: step-security/harden-runner@63c24ba6bd7ba022e95695ff85de572c04a18142 # v2.7.0
         with:
           egress-policy: audit
 

diff --git a/.github/workflows/create-branch-on-assignment.yml b/.github/workflows/create-branch-on-assignment.yml
@@ -11,11 +11,11 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Harden Runner
-        uses: step-security/harden-runner@eb238b55efaa70779f274895e782ed17c84f2895 # v2.6.1
+        uses: step-security/harden-runner@63c24ba6bd7ba022e95695ff85de572c04a18142 # v2.7.0
         with:
           egress-policy: audit
 
       - name: Create Issue Branch
-        uses: robvanderleek/create-issue-branch@4b7c39bf18d2a2684800508051ee9910e405e193 # main
+        uses: robvanderleek/create-issue-branch@50d6d5f268aa86af1c743ef581c67028faff50e4 # main
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
diff --git a/.github/workflows/dependency-review.yml b/.github/workflows/dependency-review.yml
@@ -17,11 +17,11 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Harden Runner
-        uses: step-security/harden-runner@eb238b55efaa70779f274895e782ed17c84f2895 # v2.6.1
+        uses: step-security/harden-runner@63c24ba6bd7ba022e95695ff85de572c04a18142 # v2.7.0
         with:
           egress-policy: audit
 
       - name: 'Checkout Repository'
-        uses: actions/checkout@f43a0e5ff2bd294095638e18286ca9a3d1956744 # v3.6.0
+        uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
       - name: 'Dependency Review'
-        uses: actions/dependency-review-action@0efb1d1d84fc9633afcdaad14c485cbbc90ef46c # v2.5.1
+        uses: actions/dependency-review-action@80f10bf419f34980065523f5efca7ebed17576aa # v4.1.0
diff --git a/.github/workflows/docker.yml b/.github/workflows/docker.yml
@@ -25,24 +25,24 @@ jobs:
         runs-on: ubuntu-latest
         steps:
             - name: Harden Runner
-              uses: step-security/harden-runner@eb238b55efaa70779f274895e782ed17c84f2895 # v2.6.1
+              uses: step-security/harden-runner@63c24ba6bd7ba022e95695ff85de572c04a18142 # v2.7.0
               with:
                 egress-policy: audit
 
             -
               name: Checkout
-              uses: actions/checkout@f43a0e5ff2bd294095638e18286ca9a3d1956744 # v3.6.0
+              uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
             -
               name: Set up QEMU
-              uses: docker/setup-qemu-action@2b82ce82d56a2a04d2637cd93a637ae1b359c0a7 # v2.2.0
+              uses: docker/setup-qemu-action@68827325e0b33c7199eb31dd4e31fbe9023e06e3 # v3.0.0
             -
               name: Set up Docker Buildx
-              uses: docker/setup-buildx-action@885d1462b80bc1c1c7f0b00334ad271f09369c55 # v2.10.0
+              uses: docker/setup-buildx-action@f95db51fddba0c2d1ec667646a06c2ce06100226 # v3.0.0
               with:
                 driver: docker
             -
               name: Login to GitHub Container Registry
-              uses: docker/login-action@465a07811f14bebb1938fbed4728c6a1ff8901fc # v2.2.0
+              uses: docker/login-action@343f7c4344506bcbf9b4de18042ae17996df046d # v3.0.0
               with:
                 registry: ghcr.io
                 username: ${{ github.repository_owner }}

diff --git a/.github/workflows/inactivity.yml b/.github/workflows/inactivity.yml
@@ -14,11 +14,11 @@ jobs:
       pull-requests: write
     steps:
       - name: Harden Runner
-        uses: step-security/harden-runner@eb238b55efaa70779f274895e782ed17c84f2895 # v2.6.1
+        uses: step-security/harden-runner@63c24ba6bd7ba022e95695ff85de572c04a18142 # v2.7.0
         with:
           egress-policy: audit
 
-      - uses: actions/stale@f7176fd3007623b69d27091f9b9d4ab7995f0a06 # v5.2.1
+      - uses: actions/stale@28ca1036281a5e5922ead5184a1bbf96e5fc984e # v9.0.0
         with:
           days-before-issue-stale: 60
           days-before-issue-close: 60