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Slam: add anatomical landmarks #275

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343 changes: 172 additions & 171 deletions README.md

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3 changes: 3 additions & 0 deletions library_schemas/lang/CHANGELOG.md
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# CHANGELOG for HED lang library schema

## Initial release October 28, 2024
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LANG:[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.13987483.svg)](https://doi.org/10.5281/zenodo.13987483)

# HED LANG Library Schema

The HED Language library schema (HED LANG Schema) contains vocabulary for annotating language experiments in cognitive science. The schema allows for detailed annotation of neuroimaging experiments that involve language events. It is suitable for experiments using carefully controlled experiment stimuli to address specific questions in the domain of language processing, and for experiments using complex naturalistic paradigms involving written or spoken language.
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Prefix ID
dc: contributor
dc: creator
dc: date
dc: description
dc: format
dc: identifier
dc: language
dc: publisher
dc: relation
dc: source
dc: subject
dc: title
dc: type
foaf: homepage
rdfs: comment
Prefix ID
dc: contributor
dc: creator
dc: date
dc: description
dc: format
dc: identifier
dc: language
dc: publisher
dc: relation
dc: source
dc: subject
dc: title
dc: type
foaf: homepage
rdfs: comment
terms: license
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prefix namespace IRI definition
rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns# The RDF namespace [RDF-CONCEPTS]
rdfs: http://www.w3.org/2000/01/rdf-schema#
xsd: http://www.w3.org/2000/10/XMLSchema# XML Schema Namespace [XMLSCHEMA11-2]
xml: http://www.w3.org/XML/1998/namespace
owl: http://www.w3.org/2002/07/owl# The OWL namespace [OWL2-OVERVIEW]
prov: http://www.w3.org/ns/prov# The PROV namespace [PROV-DM]
dc: http://purl.org/dc/elements/1.1/ The Dublin Core elements
terms: http://purl.org/dc/terms/ The Dublin Core terms
prefix namespace IRI definition
rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns# The RDF namespace [RDF-CONCEPTS]
rdfs: http://www.w3.org/2000/01/rdf-schema#
xsd: http://www.w3.org/2000/10/XMLSchema# XML Schema Namespace [XMLSCHEMA11-2]
xml: http://www.w3.org/XML/1998/namespace
owl: http://www.w3.org/2002/07/owl# The OWL namespace [OWL2-OVERVIEW]
prov: http://www.w3.org/ns/prov# The PROV namespace [PROV-DM]
dc: http://purl.org/dc/elements/1.1/ The Dublin Core elements
terms: http://purl.org/dc/terms/ The Dublin Core terms
foaf: http://xmlns.com/foaf/0.1/ Friend-of-a-Friend http://xmlns.com/foaf/spec/
252 changes: 252 additions & 0 deletions library_schemas/lang/hedtsv/HED_lang_1.0.0/HED_lang_1.0.0_Tag.tsv

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289 changes: 289 additions & 0 deletions library_schemas/lang/hedwiki/HED_lang_1.0.0.mediawiki

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112 changes: 0 additions & 112 deletions library_schemas/lang/hedxml/HED8.0.0.xsd

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16,516 changes: 16,516 additions & 0 deletions library_schemas/lang/hedxml/HED_lang_Latest.xml

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289 changes: 0 additions & 289 deletions library_schemas/lang/prerelease/HED_lang_1.0.0.mediawiki

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hedId rdfs:label Type omn:Domain omn:Range Properties dc:description
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Prefix ID
dc: contributor
dc: creator
dc: date
dc: description
dc: format
dc: identifier
dc: language
dc: publisher
dc: relation
dc: source
dc: subject
dc: title
dc: type
foaf: homepage
rdfs: comment
terms: license
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hedId rdfs:label Type dc:description
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hedId rdfs:label Type omn:Domain omn:Range Properties dc:description
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hedId rdfs:label Type omn:Domain omn:Range Properties dc:description
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prefix namespace IRI definition
rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns# The RDF namespace [RDF-CONCEPTS]
rdfs: http://www.w3.org/2000/01/rdf-schema#
xsd: http://www.w3.org/2000/10/XMLSchema# XML Schema Namespace [XMLSCHEMA11-2]
xml: http://www.w3.org/XML/1998/namespace
owl: http://www.w3.org/2002/07/owl# The OWL namespace [OWL2-OVERVIEW]
prov: http://www.w3.org/ns/prov# The PROV namespace [PROV-DM]
dc: http://purl.org/dc/elements/1.1/ The Dublin Core elements
terms: http://purl.org/dc/terms/ The Dublin Core terms
foaf: http://xmlns.com/foaf/0.1/ Friend-of-a-Friend http://xmlns.com/foaf/spec/
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hedId rdfs:label Attributes omn:SubClassOf dc:description omn:EquivalentTo
HED_0060010 LangHeader version="1.0.1", library="lang", withStandard="8.3.0", unmerged="True" HedHeader HedHeader and (inHedSchema some LangSchema) and (version value "1.0.1") and (library value "lang") and (withStandard value "8.3.0") and (unmerged value "True")
HED_0060011 LangPrologue HedPrologue The HED Language schema is a Hierarchical Event Descriptors Library Schema Language stimuli and experiments. The schema allows for detailed annotation of neuroimaging experiments that involve language events from carefully controlled experiments specifically targeting the neuroscience of language processing to more complex naturalistic paradigms that involve written or spoken language. HED Language schema allows for annotation of language stimuli on different levels through the orthogonal definition of Language-units and Language-unit-properties. Full sentences can be annotated with sentence-level characteristics while the individual words in the sentence can simultaneously be associated with word-level characteristics. Annotation possibilities are extensive and cover characteristics of multiple languages allowing for comparisons between languages. HedPrologue and (inHedSchema some LangSchema)
HED_0060012 LangEpilogue HedEpilogue The current prerelease of the schema is primarily centered around written language and current development focuses on adding grammatical aspect characteristics and spoken word characteristics into the vocabulary. HedEpilogue and (inHedSchema some LangSchema)

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hedId rdfs:label omn:SubClassOf hasUnitClass Attributes dc:description omn:EquivalentTo
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hedId rdfs:label omn:SubClassOf Attributes dc:description omn:EquivalentTo
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hedId rdfs:label omn:SubClassOf Attributes dc:description omn:EquivalentTo
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hedId rdfs:label omn:SubClassOf Attributes dc:description omn:EquivalentTo
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hedId rdfs:label Level omn:SubClassOf Attributes dc:description omn:EquivalentTo Annotations
Anatomical-landmark 0 Anatomical-item rooted=Anatomical-item A collection of specific points on the human body used for anatomical and sensor placement reference. dc:source "Original", rdfs:comment "Body landmarks are used to standardize sensor placement.
Head-landmark 1 Anatomical-landmark Points on the head used as reference landmarks. dc:source "Original"
Inion 2 Head-landmark The most prominent point of the occipital bone at the back of the head.
Anatomical-landmark 0 Anatomical-item rooted=Anatomical-item A collection of specific points on the human body used for anatomical and sensor placement reference. dc:source "Original", rdfs:comment "Body landmarks are used to standardize sensor placement."
Head-landmark 1 Anatomical-landmark Points on the head used as reference landmarks. dc:source "Original"
Inion 2 Head-landmark The most prominent point of the occipital bone at the back of the head. obo:has_dbxref "NCIT:C32628", obo:has_dbxref "FMA:76624", obo:has_dbxref "UBERON:0013469"
Left-helix-tragus-junction-LHJ 2 Head-landmark The point where the helix meets the tragus of the left ear.
Mastoid-process 2 Head-landmark dc:source "Original"
Nasion 2 Head-landmark The midpoint between the eyes just above the bridge of the nose.
Mastoid-process 2 Head-landmark The process of the temporal bone behind the ear. obo:has_dbxref "NCIT:C12503", obo:has_dbxref "FMA:52872", obo:has_dbxref "UBERON:0011220"
Nasion 2 Head-landmark The midpoint between the eyes just above the bridge of the nose. obo:has_dbxref "FMA:264779", obo:has_dbxref "UBERON:0016418"
Right-helix-tragus-junction-RHJ 2 Head-landmark The point where the helix meets the tragus of the right ear.
Vertex 2 Head-landmark The highest point on the head in the midline.
Torso-chest-landmark 1 Anatomical-landmark Points on the chest used as reference landmarks. dc:source "Original"
Acromion-process 2 Torso-chest-landmark The outermost point of the shoulder blade. obo:has_dbxref "NCIT:C32048", obo:has_dbxref "FMA:12525", obo:has_dbxref "UBERON:0002497"
Vertebra-prominens-C7 2 Torso-chest-landmark The seventh cervical vertebra at the base of the neck. obo:has_dbxref "NCIT:C32245", obo:has_dbxref "FMA:23260", obo:has_dbxref "UBERON:0004616"
Xiphoid-process 2 Torso-chest-landmark The small cartilaginous process at the lower end of the sternum. obo:has_dbxref "NCIT:C33895", obo:has_dbxref "FMA:7488", obo:has_dbxref "UBERON:0002207"
Vertex 2 Head-landmark The highest point on the head in the midline. obo:has_dbxref "FMA:46484", obo:has_dbxref "UBERON:1000019"
Midpoint-between-mastoid-processes-MMP 2 Head-landmark The midpoint between the mastoid processes. dc:source "Original"
Torso-chest-landmark 1 Anatomical-landmark Points on the chest used as reference landmarks. dc:source "Original"
Acromion-process 2 Torso-chest-landmark The outermost point of the shoulder blade. obo:has_dbxref "NCIT:C32048", obo:has_dbxref "FMA:23260", obo:has_dbxref "UBERON:0002497"
Vertebra-prominens-C7 2 Torso-chest-landmark The seventh cervical vertebra at the base of the neck. obo:has_dbxref "NCIT:C32245", obo:has_dbxref "FMA:12525", obo:has_dbxref "UBERON:0004616"
Xiphoid-process 2 Torso-chest-landmark The small cartilaginous process at the lower end of the sternum. obo:has_dbxref "NCIT:C33895", obo:has_dbxref "FMA:7488", obo:has_dbxref "UBERON:0002207"
Suprasternal-Notch-Jugular-Notch 2 Torso-chest-landmark The notch at the top of the sternum. obo:has_dbxref "FMA:7542"
Abdomen-landmark 1 Anatomical-landmark Points on the abdomen used as reference landmarks. dc:source "Original"
Umbilicus 2 Abdomen-landmark The navel or belly button. obo:has_dbxref "NCIT:C77533", obo:has_dbxref "FMA:61584", obo:has_dbxref "UBERON:0007118"
Anterior-Superior-Iliac-Spine-ASIS 2 Abdomen-landmark The forwardmost point of the iliac crest. obo:has_dbxref "NCIT:C139187", obo:has_dbxref "FMA:49465", obo:has_dbxref "UBERON:0013708"
Posterior-Superior-Iliac-Spine-PSIS 2 Abdomen-landmark The rearmost point of the iliac crest. obo:has_dbxref "NCIT:C139206", obo:has_dbxref "FMA:49468", obo:has_dbxref "UBERON:0013710"
Hand-landmark 1 Anatomical-landmark Points on the hand used as reference landmarks. dc:source "Original"
Third-Metacarpophalangeal-Joint-MCP 2 Hand-landmark The knuckle of the middle finger. obo:has_dbxref "NCIT:C102318", obo:has_dbxref "FMA:35255", obo:has_dbxref "UBERON:0007741"
Upper-arm-landmark 1 Anatomical-landmark Points on the upper arm used as reference landmarks. dc:source "Original"
Medial-Humerus-Epicondyle-MHE 2 Upper-arm-landmark The medial epicondyle of the humerus. obo:has_dbxref "FMA:23441", obo:has_dbxref "UBERON:0006806"
Lateral-Humerus-Epicondyle-LHE 2 Upper-arm-landmark The lateral epicondyle of the humerus. obo:has_dbxref "NCIT:C139202", obo:has_dbxref "FMA:23442", obo:has_dbxref "UBERON:0006807"
Forearm-landmark 1 Anatomical-landmark Points on the forearm used as reference landmarks. dc:source "Original"
Radial-Styloid-Process-RSP 2 Forearm-landmark The bony prominence on the radius bone at the wrist. obo:has_dbxref "FMA:23524", obo:has_dbxref "UBERON:7500078"
Ulnar-Styloid-Process-USP 2 Forearm-landmark The bony prominence on the ulna bone at the wrist. obo:has_dbxref "FMA:23628", obo:has_dbxref "UBERON:0011575"
Thigh-landmark 1 Anatomical-landmark Points on the thigh used as reference landmarks. dc:source "Original"
Greater-Trochanter 2 Thigh-landmark The large prominence at the proximal end of the femur. obo:has_dbxref "NCIT:C32698", obo:has_dbxref "FMA:7540", obo:has_dbxref "UBERON:0002503"
Femur-Medial-Epicondyle-FME 2 Thigh-landmark The medial epicondyle of the femur. obo:has_dbxref "FMA:32864", obo:has_dbxref "UBERON:0009987"
Femur-Lateral-Epicondyle-FLE 2 Thigh-landmark The lateral epicondyle of the femur. obo:has_dbxref "FMA:32867", obo:has_dbxref "UBERON:0009986"
Lower-leg-landmark 1 Anatomical-landmark Points on the lower leg used as reference landmarks. dc:source "Original"
Tibial-Tuberosity 2 Lower-leg-landmark The bony prominence on the tibia at the knee. obo:has_dbxref "FMA:35463", obo:has_dbxref "UBERON:7500062"
Foot-landmark 1 Anatomical-landmark Points on the foot used as reference landmarks. dc:source "Original"
Calcaneal-Tuberosity-CT 2 Foot-landmark The bony prominence at the heel. obo:has_dbxref "NCIT:C142295", obo:has_dbxref "FMA:33640", obo:has_dbxref "UBERON:7500094"
First-Metatarsal-Head-FMH 2 Foot-landmark The tip of the big toe. obo:has_dbxref "FMA:42983"
Lateral-Malleolus-LM 2 Foot-landmark The bony prominence on the lateral side of the ankle. obo:has_dbxref "FMA:35502", obo:has_dbxref "UBERON:0012291"
Medial-Malleolus-MM 2 Foot-landmark The bony prominence on the medial side of the ankle. obo:has_dbxref "FMA:35451"